View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3575_low_16 (Length: 249)
Name: NF3575_low_16
Description: NF3575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3575_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 2 - 242
Target Start/End: Complemental strand, 39242527 - 39242288
Alignment:
| Q |
2 |
tgtaccgccataggttctatttagggcctcggcacaccaaccatgaccaccatcgaccatgggcatcctcacttccataacagaaactgcaggtgcatgc |
101 |
Q |
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| T |
39242527 |
tgtaccgccataggttctatttagggcctcggcacaccaaccatgaccatcatcgaccatgggcatcctcacttccataacagaaactgcaggtgcatgc |
39242428 |
T |
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| Q |
102 |
gatcctggcatcataacaccagctaaaactctcagtacatttgcagcatctatgtccatgcacacattgatttcaggaactccttttcgtgctgctggta |
201 |
Q |
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|||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39242427 |
gatcctagcatcataacaccagctaaaactctca-tacgtttgcagcatctatgtccatgcacacattgatttcaggaactccttttcgtgctgctggta |
39242329 |
T |
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| Q |
202 |
ttcccgttatcttgaaatatcccaacaactgatattcttcg |
242 |
Q |
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| T |
39242328 |
ttcccgttatcttgatatatcccaacaactgattttcttcg |
39242288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 808893 - 808673
Alignment:
| Q |
9 |
ccataggttctatttagggcctcggcacaccaaccatgaccaccatcgaccatgggcatcctcacttccataacagaaactgcaggtgcatgcgatcctg |
108 |
Q |
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| T |
808893 |
ccatgggtcctatttagggcctcagcacaccaaccatgaccatcatcaaccattggcatcctcacttccataacaggaaccacagttatacgggatccag |
808794 |
T |
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| Q |
109 |
gcatcataacaccagctaaaactctcagtacatttgcagcatctatgtccatgcacacattgatttcaggaactccttttcgtgctgctggtattcccgt |
208 |
Q |
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| T |
808793 |
gcatcacaacaccggttaaaactcgcagcacgtttgcagcatctatgtccatgcacacactgatttcaggaactccttttggtgctgcaggtattcccat |
808694 |
T |
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| Q |
209 |
tatcttgaaatatcccaacaa |
229 |
Q |
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| T |
808693 |
tatcttgaaatatcctaacaa |
808673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 47844830 - 47844906
Alignment:
| Q |
150 |
tctatgtccatgcacacattgatttcaggaactccttttcgtgctgctggtattcccgttatcttgaaatatcccaa |
226 |
Q |
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| T |
47844830 |
tctatgtccatgctcacattgatttcaggagctccttttggtgcttcaggtatttcagttattttgaaatatcccaa |
47844906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 47878934 - 47879010
Alignment:
| Q |
150 |
tctatgtccatgcacacattgatttcaggaactccttttcgtgctgctggtattcccgttatcttgaaatatcccaa |
226 |
Q |
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| T |
47878934 |
tctatgtccacacacaaattgatatctggaactccttttggtgctgcaggtattcccattatcttcaaatatcccaa |
47879010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 47843607 - 47843531
Alignment:
| Q |
150 |
tctatgtccatgcacacattgatttcaggaactccttttcgtgctgctggtattcccgttatcttgaaatatcccaa |
226 |
Q |
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||||||| ||| | |||||| ||||| ||||||||| || ||||||| ||||||||| |||| || ||||||||||| |
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| T |
47843607 |
tctatgttcatacgcacattaatttctggaactcctcttggtgctgcaggtattcccattattttcaaatatcccaa |
47843531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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