View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3575_low_19 (Length: 244)
Name: NF3575_low_19
Description: NF3575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3575_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40276970 - 40276748
Alignment:
| Q |
1 |
ttttctacctcttgtatgagtatatctgcttcttttagccacttgatcacatcatcgctcaccttatcaattctatgatcaattgctttatattttgcac |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40276970 |
ttttctacctcttgtatgagtatgtctgcttcttttagccacttgatcacatcatcgctcaccttatcaattctatgatcaattgctttatattttgcac |
40276871 |
T |
|
| Q |
101 |
tcacacgatcacgatttgaaatcaggtcgttcnnnnnnncttccaactgcctatagagtttgccaaccaatttagatagatgtttcttcccactaacttc |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
40276870 |
tcacacgatcacgatttgaaatcaggtcgttctttttttcttccaactgcctatagagtttgccaaccaatttagatagatgttgcttcacactaacttc |
40276771 |
T |
|
| Q |
201 |
atgtaacaccgttcgtaacccat |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
40276770 |
atgtaacaccgttcgtaacccat |
40276748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 40333106 - 40333000
Alignment:
| Q |
16 |
atgagtatatctgcttcttttagccacttgatcacatcatcgctcaccttatcaattctatgatcaattgctttatattttgcactcacacgatcacgat |
115 |
Q |
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|||| ||| ||||||||||||||||||| | |||| |||| || ||||| ||| || || |||||||||||| | |||||||| |||||||||||||| |
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| T |
40333106 |
atgattatgtctgcttcttttagccactcaaacacaacatctctaaccttttcagttttacgatcaattgcttcaacttttgcacgcacacgatcacgat |
40333007 |
T |
|
| Q |
116 |
ttgaaat |
122 |
Q |
| |
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||||||| |
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| T |
40333006 |
ttgaaat |
40333000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 40598576 - 40598700
Alignment:
| Q |
1 |
ttttctacctcttgtatgagtatatctgcttcttttagccacttgatcacatcatcgctcaccttatcaattctatgatcaattgctttatattttgcac |
100 |
Q |
| |
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||||| |||||||| ||||||||||||| |||||||||||||| | |||| ||||| | ||||| ||| || | |||||| |||||| | |||| | | |
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| T |
40598576 |
ttttcaacctcttgcatgagtatatctgtttcttttagccactcaaacacagcatcgttgaccttttcagttttgtgatcagttgcttcaacttttacgc |
40598675 |
T |
|
| Q |
101 |
tcacacgatcacgatttgaaatcag |
125 |
Q |
| |
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|||| |||| |||||||||||||| |
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| T |
40598676 |
gcacaagatctcgatttgaaatcag |
40598700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 40283273 - 40283161
Alignment:
| Q |
10 |
tcttgtatgagtatatctgcttcttttagccacttgatcacatcatcgctcaccttatcaattctatgatcaattgctttatattttgcactcacacgat |
109 |
Q |
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|||||||||| || |||| |||||||||||||| | |||| |||| || ||||| ||| || || ||||||||||| | |||||||| | |||||| |
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| T |
40283273 |
tcttgtatgatcatgtctgtttcttttagccactcaaacacaacatctctaaccttttcagttttacaatcaattgcttcaacttttgcacgcgcacgat |
40283174 |
T |
|
| Q |
110 |
cacgatttgaaat |
122 |
Q |
| |
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||||||||||||| |
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| T |
40283173 |
cacgatttgaaat |
40283161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 40376145 - 40376035
Alignment:
| Q |
10 |
tcttgtatgagtatatctgcttcttttagccacttgatcacatcatcgctcaccttatcaattctatgatcaattgctttatattttgcactcacacgat |
109 |
Q |
| |
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|||||||||| ||| |||| || ||||||||||| | |||| |||| || ||||| ||| || || |||||||||||| | ||||||| |||||||| |
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| T |
40376145 |
tcttgtatgattatgtctgttttttttagccactcaaacacaacatctctgaccttttcagttttaggatcaattgcttcaacttttgcatgcacacgat |
40376046 |
T |
|
| Q |
110 |
cacgatttgaa |
120 |
Q |
| |
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| ||||||||| |
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| T |
40376045 |
cgcgatttgaa |
40376035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 40386384 - 40386278
Alignment:
| Q |
16 |
atgagtatatctgcttcttttagccacttgatcacatcatcgctcaccttatcaattctatgatcaattgctttatattttgcactcacacgatcacgat |
115 |
Q |
| |
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|||| ||| ||||||||||||||||||| | |||| |||| || ||||| ||| || || |||||||||| | || ||||| |||||||||||||| |
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| T |
40386384 |
atgactatttctgcttcttttagccactcaaacacaacatctctaaccttttcagttttactgtcaattgcttcaacttgtgcacgcacacgatcacgat |
40386285 |
T |
|
| Q |
116 |
ttgaaat |
122 |
Q |
| |
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||||||| |
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|
| T |
40386284 |
ttgaaat |
40386278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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