View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3575_low_2 (Length: 677)

Name: NF3575_low_2
Description: NF3575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3575_low_2
NF3575_low_2
[»] chr6 (56 HSPs)
chr6 (9-470)||(28296926-28297387)
chr6 (9-470)||(28514686-28515147)
chr6 (9-438)||(28235132-28235561)
chr6 (9-467)||(28326016-28326474)
chr6 (9-468)||(28243332-28243791)
chr6 (9-457)||(28181665-28182114)
chr6 (9-470)||(28185928-28186389)
chr6 (9-470)||(28227488-28227948)
chr6 (9-324)||(28503795-28504110)
chr6 (61-277)||(29843225-29843441)
chr6 (45-277)||(29826714-29826946)
chr6 (18-462)||(28097638-28098082)
chr6 (12-238)||(28140302-28140528)
chr6 (339-429)||(26623847-26623937)
chr6 (339-429)||(26729824-26729914)
chr6 (110-256)||(26849461-26849607)
chr6 (103-385)||(26937649-26937931)
chr6 (530-621)||(28138257-28138352)
chr6 (532-628)||(30587465-30587561)
chr6 (9-122)||(25483942-25484055)
chr6 (9-73)||(27610306-27610370)
chr6 (9-73)||(27717685-27717749)
chr6 (9-124)||(25539424-25539539)
chr6 (9-124)||(26056803-26056918)
chr6 (110-225)||(26724348-26724463)
chr6 (9-92)||(26884983-26885066)
chr6 (339-429)||(26656541-26656631)
chr6 (339-429)||(26762512-26762602)
chr6 (339-428)||(29826560-29826649)
chr6 (335-415)||(31288895-31288975)
chr6 (9-124)||(25511773-25511888)
chr6 (9-124)||(26076773-26076888)
chr6 (9-92)||(27592207-27592290)
chr6 (9-92)||(27676806-27676889)
chr6 (339-434)||(27698102-27698197)
chr6 (339-429)||(25539119-25539209)
chr6 (339-429)||(26803022-26803112)
chr6 (339-429)||(31285135-31285225)
chr6 (339-428)||(26849289-26849378)
chr6 (335-388)||(26959743-26959796)
chr6 (369-429)||(26647055-26647115)
chr6 (369-429)||(26753023-26753083)
chr6 (9-92)||(26656878-26656961)
chr6 (9-92)||(26762849-26762932)
chr6 (9-92)||(28793272-28793355)
chr6 (339-429)||(26143444-26143534)
chr6 (138-256)||(26975700-26975818)
chr6 (339-429)||(27610636-27610726)
chr6 (339-429)||(27718015-27718105)
chr6 (368-425)||(25511518-25511575)
chr6 (368-429)||(25580298-25580359)
chr6 (376-429)||(27427165-27427218)
chr6 (373-429)||(25483635-25483691)
chr6 (340-388)||(26893105-26893153)
chr6 (286-386)||(28150495-28150595)
chr6 (192-268)||(29477437-29477513)
[»] scaffold0038 (4 HSPs)
scaffold0038 (9-438)||(35294-35723)
scaffold0038 (9-468)||(43494-43953)
scaffold0038 (9-470)||(27986-28446)
scaffold0038 (328-467)||(117331-117470)
[»] scaffold0019 (1 HSPs)
scaffold0019 (9-468)||(57480-57940)
[»] chr3 (1 HSPs)
chr3 (530-659)||(4292930-4293059)
[»] chr4 (10 HSPs)
chr4 (11-470)||(5090138-5090600)
chr4 (371-429)||(18731048-18731106)
chr4 (371-429)||(18655021-18655079)
chr4 (9-92)||(18654659-18654742)
chr4 (9-92)||(18678742-18678825)
chr4 (9-92)||(18698582-18698665)
chr4 (9-92)||(18730686-18730769)
chr4 (339-429)||(18698912-18699002)
chr4 (371-429)||(18723629-18723687)
chr4 (376-429)||(18074337-18074390)
[»] chr2 (2 HSPs)
chr2 (12-445)||(3280219-3280652)
chr2 (143-202)||(17699899-17699958)
[»] chr5 (2 HSPs)
chr5 (9-268)||(16691604-16691863)
chr5 (533-608)||(12107070-12107147)
[»] chr1 (6 HSPs)
chr1 (8-237)||(28126860-28127089)
chr1 (339-429)||(267856-267946)
chr1 (368-429)||(28127220-28127281)
chr1 (329-385)||(26136508-26136564)
chr1 (110-238)||(26136655-26136783)
chr1 (177-237)||(28163729-28163789)
[»] scaffold0349 (2 HSPs)
scaffold0349 (9-73)||(2725-2789)
scaffold0349 (339-429)||(3055-3145)
[»] chr8 (2 HSPs)
chr8 (533-609)||(8058824-8058900)
chr8 (339-431)||(31905625-31905717)
[»] scaffold0003 (1 HSPs)
scaffold0003 (376-429)||(60145-60198)


Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 56)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 9 - 470
Target Start/End: Original strand, 28296926 - 28297387
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaacta 108  Q
    |||||||| |||||||||| |||||||||||  |||||||||| ||||||  |||||||||||||||||||||||||||||||| |||||||||||||||    
T  28296926 acatcatctagaatcaacaaaaccttctttcggtgaagcctttgctttatgattggaattccctcgttgacatctcctaacttaacgtccaattcaacta 28297025  T
Q  109 ttttggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctat 208  Q
     |||||||||||||||||| ||||||   |||||||||| ||||| ||||||||| ||||  | ||||||||||||||||||||||||||||||||||||    
T  28297026 atttggaaaggagcttttcctgtagatgctctaaaccatatttagctgaattttcccttacattgtgaagaaaacacaaaccatcaaattgatcggctat 28297125  T
Q  209 ggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccattagatccaacatccaaaaat 308  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||  | ||||| ||||    
T  28297126 ggaattataaactgctctggcaagtgttgtctttcccatccctccagtcccatagatccctagcatctgaacttcaccattagatctgagatccagaaat 28297225  T
Q  309 gaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttct 408  Q
    ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  28297226 gaatttacttttaggaccctagactggagaccaacggggtaatcggcaacatataaaggaacacgattgatcttgctggatacgtatttgactatcttct 28297325  T
Q  409 caataaactcgtattcatatccactcctacccaatcaaaaaagattgagtaaatgcatcaca 470  Q
    |||||||||| |||||||||||| ||||| ||||||||| ||| ||||||||||||||||||    
T  28297326 caataaactcatattcatatccattcctatccaatcaaataagtttgagtaaatgcatcaca 28297387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 9 - 470
Target Start/End: Complemental strand, 28515147 - 28514686
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaacta 108  Q
    |||||||| |||||||||| |||||||||||  |||||||||| ||||||  |||||||||||||||||||||||||||||||| |||||||||||||||    
T  28515147 acatcatctagaatcaacaaaaccttctttcggtgaagcctttgctttatgattggaattccctcgttgacatctcctaacttaacgtccaattcaacta 28515048  T
Q  109 ttttggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctat 208  Q
     |||||||||||||||||| ||||||   |||||||||| ||||| ||||||||| ||||  | ||||||||||||||||||||||||||||||||||||    
T  28515047 atttggaaaggagcttttcctgtagatgctctaaaccatatttagctgaattttcccttacattgtgaagaaaacacaaaccatcaaattgatcggctat 28514948  T
Q  209 ggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccattagatccaacatccaaaaat 308  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||  | ||||| ||||    
T  28514947 ggaattataaactgctctggcaagtgttgtctttcccatccctccagtcccatagatccctagcatctgaacttcaccattagatctgagatccagaaat 28514848  T
Q  309 gaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttct 408  Q
    ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  28514847 gaatttacttttaggaccctagactggagaccaacggggtaatcggcaacatataaaggaacacgattgatcttgctggatacgtatttgactatcttct 28514748  T
Q  409 caataaactcgtattcatatccactcctacccaatcaaaaaagattgagtaaatgcatcaca 470  Q
    |||||||||| |||||||||||| ||||| ||||||||| ||| ||||||||||||||||||    
T  28514747 caataaactcatattcatatccattcctatccaatcaaataagtttgagtaaatgcatcaca 28514686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 438
Target Start/End: Complemental strand, 28235561 - 28235132
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaacta 108  Q
    |||||||| ||||||||||||||||||||||  |||||||||| ||||||  ||||||||||||| |||||||||||||||| | |||||||||||||||    
T  28235561 acatcatctagaatcaacagaaccttctttcggtgaagcctttgctttatgattggaattccctcattgacatctcctaactcaacgtccaattcaacta 28235462  T
Q  109 ttttggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctat 208  Q
     |||||||||||||||| | ||||||   |||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| |||||    
T  28235461 atttggaaaggagctttccctgtagatgctctaaaccatatttagatgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctat 28235362  T
Q  209 ggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccattagatccaacatccaaaaat 308  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||    
T  28235361 ggaattataaactgctcttgcaagtgttgtctttccaattccaccagtcccatagatccctagcatctgaacttcaccattagatccaacatccacacat 28235262  T
Q  309 gaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttct 408  Q
    ||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  28235261 gaagttacttttaggaccctagacttgagaccaacagggtaatcggcaacatataaaggaacatgattgatcttgtttgatacatatttgactatcttct 28235162  T
Q  409 caataaactcgtattcatatccactcctac 438  Q
     |||| ||| ||||||||||||| ||||||    
T  28235161 taatatacttgtattcatatccattcctac 28235132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 467
Target Start/End: Complemental strand, 28326474 - 28326016
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaacta 108  Q
    |||||||| ||||||||||||||||||||||  |||||||||| ||||||  |||||| ||| || |||||||||||||||||| ||| |||||||||||    
T  28326474 acatcatcgagaatcaacagaaccttctttcggtgaagcctttgctttatgattggaactccatcattgacatctcctaacttaacgtacaattcaacta 28326375  T
Q  109 ttttggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctat 208  Q
     |||||||||||||||||| ||||||   |||||||||| ||||| ||||||| | ||||| |||| |||||||||||||||||||||||||||||||||    
T  28326374 atttggaaaggagcttttcctgtagatgctctaaaccatatttagctgaatttgcacttatttcgttaagaaaacacaaaccatcaaattgatcggctat 28326275  T
Q  209 ggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccattagatccaacatccaaaaat 308  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| | || |    
T  28326274 ggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaactttaccattagatccaacatctataagt 28326175  T
Q  309 gaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttct 408  Q
    |||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||||||||||| | |||||||  || |||| ||||||||||||||||    
T  28326174 gaatttacttctaggatcctagactcgagacctacagggtaatccgcaacatataaaggaacacaactgatcttcctgaatacgtatttgactatcttct 28326075  T
Q  409 caataaactcgtattcatatccactcctacccaatcaaaaaagattgagtaaatgcatc 467  Q
    ||||||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||    
T  28326074 caataaactcgtattcatagccattcctacccaatcaaataagtttgagtaaatgcatc 28326016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 9 - 468
Target Start/End: Complemental strand, 28243791 - 28243332
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaacta 108  Q
    |||||||| ||||| | ||||||||| ||||  |||||||||| ||||||  |||||||||||||||||| |||||| |||| |  ||||||||||||||    
T  28243791 acatcatcgagaattagcagaaccttgtttcggtgaagccttttctttattattggaattccctcgttgatatctcccaactcaatgtccaattcaacta 28243692  T
Q  109 ttttggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctat 208  Q
     |||||||||||||||||| ||||||   |||||||||| ||||||||||||||| ||||  |||||||||||||| |||| |||||||||||| |||||    
T  28243691 atttggaaaggagcttttcctgtagatgctctaaaccatatttagttgaattttcccttacatcgtgaagaaaacataaacaatcaaattgatcagctat 28243592  T
Q  209 ggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccattagatccaacatccaaaaat 308  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||| ||||| | ||||    
T  28243591 ggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatccctagcatatgaactacaccagtagatccgacatcaagaaat 28243492  T
Q  309 gaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttct 408  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| |||||| ||||||||||    
T  28243491 ttatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatatagaggaacacgattgattttgctggataaatattttactatcttct 28243392  T
Q  409 caataaactcgtattcatatccactcctacccaatcaaaaaagattgagtaaatgcatca 468  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||    
T  28243391 caataaactcgtattcatatccattcctacccaatcaaataagtttgagtaaatgcatca 28243332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 457
Target Start/End: Complemental strand, 28182114 - 28181665
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttccttt-atctttggaattccctcgttgacatctcctaacttaccgtccaattcaact 107  Q
    |||||||| |||||||| |||||||||||||  |||||||||| |||| ||  ||||| |||||||||||||||||||||||||| ||||||||||| ||    
T  28182114 acatcatctagaatcaatagaaccttctttcggtgaagcctttgcttttatgattggagttccctcgttgacatctcctaacttaacgtccaattcagct 28182015  T
Q  108 attttggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggcta 207  Q
    | |||||||||||| ||||| ||||||   |||||||||| ||||| ||||||| | |||||||||| ||||||||||||||||||||||||||| ||||    
T  28182014 aatttggaaaggagattttcctgtagatgctctaaaccatatttagctgaatttgcccttatgtcgttaagaaaacacaaaccatcaaattgatcagcta 28181915  T
Q  208 tggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccattagatccaacatccaaaaa 307  Q
    ||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||    
T  28181914 tggaattataaactgctcttgcaagcgtcgtctttcccattcctccagtcccatagatccctagcatctgaacttcaccattagatccgacatccagaaa 28181815  T
Q  308 tgaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttc 407  Q
    |||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||| ||||||||| ||||| || ||||||||||||||     
T  28181814 tgaatttacttttaggaccctagactcgagaccaacatagtaatcggcaacatataaaggaacacaattgatctttttggaaacgtatttgactatcttt 28181715  T
Q  408 tcaataaactcgtattcatatccactcctacccaatcaaaaaagattgag 457  Q
    || |||||||| |||||||||||| ||||||||||||||| ||| |||||    
T  28181714 tcgataaactcatattcatatccattcctacccaatcaaataagtttgag 28181665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 470
Target Start/End: Complemental strand, 28186389 - 28185928
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaacta 108  Q
    |||||||| |||||||||| ||||||||||   |||||||||| || |||  ||||||||||||||| ||||||||||||||||  ||||| ||  ||||    
T  28186389 acatcatcgagaatcaacaaaaccttcttttggtgaagccttttctctatgattggaattccctcgtagacatctcctaacttaatgtccagtttgacta 28186290  T
Q  109 ttttggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctat 208  Q
     ||| |||||||||||| | || |||   || ||||||| ||||| ||||||| | ||||  |||||||||||||||||| ||||||||||||| ||||     
T  28186289 atttagaaaggagctttccctgcagatgctccaaaccatatttagctgaatttccccttacatcgtgaagaaaacacaaatcatcaaattgatcagctag 28186190  T
Q  209 ggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccattagatccaacatccaaaaat 308  Q
    |||||||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||| ||||| || |    
T  28186189 ggaattataaactgctcttgcaagtgtcgtctttcccattcctccaggcccatagatccctagcatctgaacttcaccattagatccaaaatccataagt 28186090  T
Q  309 gaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttct 408  Q
    |||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  28186089 gaatttacttttagaaccctagactcgataccaacagggaaatcagcaacatataaaggaacatgattgatcttgttagatacatatttgactatcttct 28185990  T
Q  409 caataaactcgtattcatatccactcctacccaatcaaaaaagattgagtaaatgcatcaca 470  Q
    |||||||||||| |||||| ||| ||||||||||| ||| ||| |||| ||| |||||||||    
T  28185989 caataaactcgtgttcatagccattcctacccaataaaataagtttgattaagtgcatcaca 28185928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 470
Target Start/End: Complemental strand, 28227948 - 28227488
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaacta 108  Q
    |||||||| |||||||| ||||| |||||||  |||||||||| |||||    ||||||||||||||||||||||||||||||| | |||||||||||||    
T  28227948 acatcatcgagaatcaatagaactttctttcggtgaagcctttgctttaagactggaattccctcgttgacatctcctaacttaacttccaattcaacta 28227849  T
Q  109 ttttggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctat 208  Q
     ||||||||||| |||| | | ||||   |||||||||| ||||| ||||||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  28227848 atttggaaaggatctttacctatagatgctctaaaccatatttagctgaattttcccttacatcgtgaagaaaacacaaaccatcaaattgatcggctat 28227749  T
Q  209 ggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccattagatccaacatccaaaaat 308  Q
      ||||||||||||| || ||||||||||||||||||||||||| | |||| |||||||||| ||||||  | |||||||||||||||||||||| || |    
T  28227748 aaaattataaactgcccttgcaagtgttgtctttcccattccacgattcccgtagatccctatcatctgtgcttcaccattagatccaacatccataagt 28227649  T
Q  309 gaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttct 408  Q
    ||||||||||||||||||||||| || | ||||||||||||||| ||||||| |||||||||| ||||||||||||| |||| |||||||||||||||||    
T  28227648 gaatttacttttaggaccctagattcaacaccaacagggtaatcggcaacatgtaaaggaacatgattgatcttgttagatatatatttgactatcttct 28227549  T
Q  409 caataaactcgtattcatatccactcctacccaatcaaaaaagattgagtaaatgcatcaca 470  Q
    | ||||||||| ||||||| ||| ||||||||||||||| ||  ||||||||||||||||||    
T  28227548 cgataaactcgcattcatagccattcctacccaatcaaataa-tttgagtaaatgcatcaca 28227488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 324
Target Start/End: Complemental strand, 28504110 - 28503795
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaacta 108  Q
    |||||||| ||||||||||||||||||||||  |||||||||| ||||||  |||||| ||| || |||||||||||||||||| ||| |||||||||||    
T  28504110 acatcatcgagaatcaacagaaccttctttcggtgaagcctttgctttatgattggaactccatcattgacatctcctaacttaacgtacaattcaacta 28504011  T
Q  109 ttttggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctat 208  Q
     |||||||||||||||||| ||||||   |||||||||| ||||| ||||||| | ||||| |||| |||||||||||||||||||||||||||||||||    
T  28504010 atttggaaaggagcttttcctgtagatgctctaaaccatatttagctgaatttgcacttatttcgttaagaaaacacaaaccatcaaattgatcggctat 28503911  T
Q  209 ggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccattagatccaacatccaaaaat 308  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| | || |    
T  28503910 ggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaactttaccattagatccaacatctataagt 28503811  T
Q  309 gaatttacttttagga 324  Q
    |||||||||| |||||    
T  28503810 gaatttacttctagga 28503795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 61 - 277
Target Start/End: Original strand, 29843225 - 29843441
Alignment:
Q  61 ttggaattccctcgttgacatctcctaacttaccgtccaattcaactattttggaaaggagcttttcttgtagagattctaaaccatgtttagttgaatt 160  Q
    |||||||||| || || |||||||||| ||||  |||||| |||||| |||||||||| ||||| ||||| |||   ||||| |||||||||| |||| |    
T  29843225 ttggaattccttcattaacatctcctagcttaatgtccaaatcaactgttttggaaagaagcttctcttggagatgctctaagccatgtttagctgaact 29843324  T
Q  161 ttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagtccca 260  Q
    ||||||   ||||||||||||||||||||  ||||||| ||| || ||  ||||||||| |||||  ||||||||||| || |||| ||||||| | |||    
T  29843325 ttctctcccgtcgtgaagaaaacacaaacattcaaatttatcagcaatcaaattataaattgctcgagcaagtgttgttttacccaatccaccaattcca 29843424  T
Q  261 tagatccctagcatctg 277  Q
    || ||||| | ||||||    
T  29843425 taaatccccaccatctg 29843441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 45 - 277
Target Start/End: Complemental strand, 29826946 - 29826714
Alignment:
Q  45 agcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaactattttggaaaggagcttttcttgtagagattctaaac 144  Q
    ||||||| ||||||  |||||||||| ||||| |||||||||| ||||  ||||||||||||| |||||||||| ||||| | ||| |||  |||||| |    
T  29826946 agcctttgctttattattggaattccttcgttaacatctcctagcttagtgtccaattcaactgttttggaaagaagcttctgttggagatgttctaagc 29826847  T
Q  145 catgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcc 244  Q
    ||||||||| |||| ||||||| | ||| |||||||||||||| |  ||||||| |||  | ||   |||||||| |||||  ||||||||||| || ||    
T  29826846 catgtttagctgaactttctctcaagtcatgaagaaaacacaagcattcaaatttatcaccaatcatattataaattgctcgagcaagtgttgttttacc 29826747  T
Q  245 cattccaccagtcccatagatccctagcatctg 277  Q
    || ||| ||| | ||||| ||||| | ||||||    
T  29826746 caatccgccaattccataaatccccaccatctg 29826714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 28097638 - 28098082
Alignment:
Q  18 agaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaactattttggaaa 117  Q
    |||||||| ||||||||||||   || |||||||  |||||  |||||||||||||  |   |||| ||||||||  ||||||| |||| || |||||||    
T  28097638 agaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctcactagtatctgctaacttaatgtccaatccaacaatcttggaaa 28097737  T
Q  118 ggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctatggaattata 217  Q
    | |  | || ||| |||   ||||| |||||||| | |||||||||||| |  | |||||| ||||| | ||  ||||||||| | || ||| |||||||    
T  28097738 gcaaatctttttggagatgctctaagccatgttttgctgaattttctctcacattgtgaaggaaacagacacattcaaattgaccagcaatgaaattata 28097837  T
Q  218 aactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccattagatccaacatccaaaaatgaatttact 317  Q
    ||| ||| | |||||||||||||| || || || || |  ||||||||||| |||||||  || | | ||||||||||||| |  | || ||| ||||||    
T  28097838 aaccgcttttgcaagtgttgtcttacctatccctcctggtccatagatcccaagcatcttgactttatcattagatccaacttttagaagtgagtttact 28097937  T
Q  318 tttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaact 417  Q
    ||||  || | |   |  || ||||| ||||||||| |||||| |||| | ||| |||| |  ||||||||||||||||||||||| | |  ||||||||    
T  28097938 tttaaaactcgatgttgtaggccaacggggtaatcaacaacatgtaaaaggacatgattcaatttgttggatacatatttgactatttcccgaataaact 28098037  T
Q  418 cgtattcatatccactcctacccaatcaaaaaagattgagtaaat 462  Q
    || ||||||||||| ||||  ||||| | | ||| ||||||||||    
T  28098038 cgaattcatatccattcctggccaataagataagtttgagtaaat 28098082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 28140528 - 28140302
Alignment:
Q  12 tcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaactattt 111  Q
    ||||| |||||||| ||||||||||||    | ||||||||||||||  |||| ||||| ||  | |||| ||| |||||| ||  |||  ||||| |||    
T  28140528 tcatcgagaatcaaaagaaccttctttagtcgtagcctttcctttattattggtattccttcacttacatgtccaaacttaacgctcaaaccaactgttt 28140429  T
Q  112 tggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctatgga 211  Q
    | |||||||| |||||||| |||  |||||| |||||||||| |||| ||||||| |  |  ||||||||||||||||  |||||||||||||| ||  |    
T  28140428 tagaaaggagtttttcttggagatcttctaagccatgtttagctgaaatttctctcacattatgaagaaaacacaaacattcaaattgatcggcaataaa 28140329  T
Q  212 attataaactgctctggcaagtgttgt 238  Q
    |||||||| ||||   |||||||||||    
T  28140328 attataaattgcttgtgcaagtgttgt 28140302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 339 - 429
Target Start/End: Complemental strand, 26623937 - 26623847
Alignment:
Q  339 ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    ||||||||||| | |||||||| ||| || |||||||||||||||||||| |  |||||||||||||| |||||||| || ||||||||||    
T  26623937 ccaacagggtatttagcaacatgtaagggcacacgattgatcttgttggagatgtatttgactatcttttcaataaaatcatattcatatc 26623847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 339 - 429
Target Start/End: Complemental strand, 26729914 - 26729824
Alignment:
Q  339 ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    ||||||||||| | |||||||| ||| || |||||||||||||||||||| |  |||||||||||||| |||||||| || ||||||||||    
T  26729914 ccaacagggtatttagcaacatgtaagggcacacgattgatcttgttggagatgtatttgactatcttttcaataaaatcatattcatatc 26729824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 110 - 256
Target Start/End: Complemental strand, 26849607 - 26849461
Alignment:
Q  110 tttggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctatg 209  Q
    |||||| |||||||  ||||| ||| | ||||| |||||||||  |||||||||||| |  |||||||| ||||||  ||  ||||||||||| || ||     
T  26849607 tttggagaggagctgctcttggagaaactctaagccatgtttaagtgaattttctctcacatcgtgaaggaaacacttacattcaaattgatcagcaatc 26849508  T
Q  210 gaattataaactgctctggcaagtgttgtctttcccattccaccagt 256  Q
    |||||||||||||||   ||||||||||| ||||||||||| |||||    
T  26849507 gaattataaactgcttgagcaagtgttgtttttcccattcctccagt 26849461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 103 - 385
Target Start/End: Complemental strand, 26937931 - 26937649
Alignment:
Q  103 caactattttggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatc 202  Q
    ||||| ||| |||||||||||| || || ||   || ||||||||||||||||| |||||||| ||  |  ||||||||||||||||  |||||||||||    
T  26937931 caactgtttcggaaaggagcttctcctggaggttttgtaaaccatgtttagttgcattttctcgtacattatgaagaaaacacaaactttcaaattgatc 26937832  T
Q  203 ggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccattagatccaacatcc 302  Q
      | ||  ||||||||| |||||  ||||||||||  || || ||||| ||| ||||||||||||||| |||    ||  || ||| | |||||| || |    
T  26937831 accaatcaaattataaattgctcgtgcaagtgttgatttaccaattccgccaatcccatagatccctaccatacatactccatcatcatatccaatattc 26937732  T
Q  303 aaaaatgaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgtt 385  Q
    | ||  |||||||||| ||| |  | |||||  || ||||| |||||||| ||||||| |||||||  |||||||||||||||    
T  26937731 agaagagaatttacttgtagcaatcgagactgcagtccaacggggtaatccgcaacatgtaaaggaggacgattgatcttgtt 26937649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 530 - 621
Target Start/End: Original strand, 28138257 - 28138352
Alignment:
Q  530 ggcaggagtgggcctgcaccctattaca-----aatgagatagtctaaaaatggagaccaagatgtctttgataaaagaaaagggtgagaagcatag 621  Q
    |||||||||||| |||||||||||||||     ||||||| | |||||||||||||||||| |||||| ||||||||| |||||| |||||||||||    
T  28138257 ggcaggagtgggtctgcaccctattacagtattaatgagagaatctaaaaatggagaccaaaatgtctctgataaaag-aaagggcgagaagcatag 28138352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 532 - 628
Target Start/End: Complemental strand, 30587561 - 30587465
Alignment:
Q  532 caggagtgggcctgcaccctattacaaatgagatagtctaaaaatggagaccaagatgtctttgataaaagaaaagggtgagaagcatagatggcaa 628  Q
    ||||||||||||||||||||||||||||||||| | |||||||| | ||||||| ||||   | | ||||||||||||  ||||||| |||||||||    
T  30587561 caggagtgggcctgcaccctattacaaatgagagaatctaaaaaagtagaccaaaatgttactaaaaaaagaaaaggggaagaagcaaagatggcaa 30587465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 25484055 - 25483942
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaacta 108  Q
    |||||||||| |||||| |||| |||||||||    || |||||||||||  |||| ||||||||  | |||||| ||||||||||||| |||| |||||    
T  25484055 acatcatcaacaatcaaaagaatcttctttctagatagtctttcctttatgattggtattccctcactaacatcttctaacttaccgtcaaatttaacta 25483956  T
Q  109 ttttggaaaggagc 122  Q
    |||| |||||||||    
T  25483955 tttttgaaaggagc 25483942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 27610306 - 27610370
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctc 73  Q
    ||||||||||||||||| |||||||||||||| || |||||||||||||| |  |||||||||||    
T  27610306 acatcatcaagaatcaaaagaaccttctttctatgtagcctttcctttatataaggaattccctc 27610370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 27717685 - 27717749
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctc 73  Q
    ||||||||||||||||| |||||||||||||| || |||||||||||||| |  |||||||||||    
T  27717685 acatcatcaagaatcaaaagaaccttctttctatgtagcctttcctttatataaggaattccctc 27717749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 25539539 - 25539424
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaacta 108  Q
    ||||||||||||||||| |||| ||||||| |    || |||||||||||  |||  ||||||||  | |||||| ||||||||||||| |||| |||||    
T  25539539 acatcatcaagaatcaaaagaatcttctttttagatagtctttcctttatgattgttattccctcactaacatcttctaacttaccgtcaaatttaacta 25539440  T
Q  109 ttttggaaaggagctt 124  Q
    |||| |||||||||||    
T  25539439 tttttgaaaggagctt 25539424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 26056918 - 26056803
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaacta 108  Q
    ||||| ||||||||||| |||| |||||||||    || |||||||||||  |||| ||||||||  | |||||| |||||| |||||| |||| |||||    
T  26056918 acatcgtcaagaatcaaaagaatcttctttctagatagtctttcctttataattggtattccctcactaacatcttctaactgaccgtcaaatttaacta 26056819  T
Q  109 ttttggaaaggagctt 124  Q
    |||| |||||||||||    
T  26056818 tttttgaaaggagctt 26056803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 225
Target Start/End: Complemental strand, 26724463 - 26724348
Alignment:
Q  110 tttggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctatg 209  Q
    |||||| |||||||| ||||| ||| ||||||| |||| |||| ||||||||||||| |  | |||||| |||||||| || ||||||||||| || ||     
T  26724463 tttggagaggagcttctcttggagatattctaagccatatttaattgaattttctctcacattgtgaaggaaacacaacccttcaaattgatcagcaatc 26724364  T
Q  210 gaattataaactgctc 225  Q
     ||| |||||||||||    
T  26724363 aaatcataaactgctc 26724348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 26885066 - 26884983
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaactta 92  Q
    ||||||||||||||||| |||| ||||||||| || || |||||||||||   ||||||||||||  | |||||||||||||||    
T  26885066 acatcatcaagaatcaaaagaatcttctttctatgtagtctttcctttatgagtggaattccctcactaacatctcctaactta 26884983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 339 - 429
Target Start/End: Complemental strand, 26656631 - 26656541
Alignment:
Q  339 ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    ||||||||||| |  ||||||| ||||  ||||||||||||||||| ||| |  | ||||||||| ||||||||||||| |||||||||||    
T  26656631 ccaacagggtatttggcaacatgtaaaaaaacacgattgatcttgtcggagatgtctttgactatattctcaataaacttgtattcatatc 26656541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 339 - 429
Target Start/End: Complemental strand, 26762602 - 26762512
Alignment:
Q  339 ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    ||||||||||| |  ||||||| ||||  ||||||||||||||||| ||| |  | ||||||||| ||||||||||||| |||||||||||    
T  26762602 ccaacagggtatttggcaacatgtaaaaaaacacgattgatcttgtcggagatgtctttgactatattctcaataaacttgtattcatatc 26762512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 339 - 428
Target Start/End: Complemental strand, 29826649 - 29826560
Alignment:
Q  339 ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatat 428  Q
    |||||||||||||| |||||||  | ||| ||||| |   |||||||||| || | ||||||||||||| ||||||||||||||||||||    
T  29826649 ccaacagggtaatccgcaacatgaagagggacacgctcagtcttgttggaaacttctttgactatcttcacaataaactcgtattcatat 29826560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 31288975 - 31288895
Alignment:
Q  335 gagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaa 415  Q
    |||||||||| ||||||||||||||| |||||||||| | || ||||||||||| |||| | | ||||| || ||||||||    
T  31288975 gagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacatctgtaactattttttcaataaa 31288895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 25511888 - 25511773
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaacta 108  Q
    ||||| ||||||||||| |||| |||||||||    || |||||||||||  |||| ||||||||  | |||||| ||| || |||||| |||| |||||    
T  25511888 acatcgtcaagaatcaaaagaatcttctttctagatagtctttcctttataattggtattccctcactaacatcttctatctgaccgtcaaatttaacta 25511789  T
Q  109 ttttggaaaggagctt 124  Q
    |||| |||||||||||    
T  25511788 tttttgaaaggagctt 25511773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 26076888 - 26076773
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaacta 108  Q
    ||||| ||||||||||| |||| |||||||||    || |||||||||||  |||| ||||||||  | |||||| ||| || |||||| |||| |||||    
T  26076888 acatcgtcaagaatcaaaagaatcttctttctagatagtctttcctttataattggtattccctcactaacatcttctatctgaccgtcaaatttaacta 26076789  T
Q  109 ttttggaaaggagctt 124  Q
    |||| |||||||||||    
T  26076788 tttttgaaaggagctt 26076773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 27592207 - 27592290
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaactta 92  Q
    ||||||||||||||||| |||| ||||||||  || |||||||||||||| || |||||||| ||| | |||  ||||||||||    
T  27592207 acatcatcaagaatcaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctaactta 27592290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 27676806 - 27676889
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaactta 92  Q
    ||||||||||||||||| |||| ||||||||  || |||||||||||||| || |||||||| ||| | |||  ||||||||||    
T  27676806 acatcatcaagaatcaaaagaatcttctttccatgtagcctttcctttattttaggaattccttcgctaacacttcctaactta 27676889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 339 - 434
Target Start/End: Original strand, 27698102 - 27698197
Alignment:
Q  339 ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatccactc 434  Q
    |||||||||||||  ||||||| ||| ||   |||| ||||||||||||| |  |||||||||||||  |||||||||| ||||||||||| ||||    
T  27698102 ccaacagggtaattggcaacatgtaagggctgacgactgatcttgttggagatgtatttgactatctcttcaataaacttgtattcatatctactc 27698197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 339 - 429
Target Start/End: Complemental strand, 25539209 - 25539119
Alignment:
Q  339 ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    ||||||||||| |  || |||||||||  |||| ||||||| |||||||| |  | || |||||||||||||||||||| |||||||||||    
T  25539209 ccaacagggtatttggccacatataaaaaaacatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatc 25539119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 339 - 429
Target Start/End: Complemental strand, 26803112 - 26803022
Alignment:
Q  339 ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    ||||||||||||| |||||||| ||| ||   |||||||||||||||||| |  |||||||||||||   |||| |||| |||||||||||    
T  26803112 ccaacagggtaattagcaacatgtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatc 26803022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 339 - 429
Target Start/End: Complemental strand, 31285225 - 31285135
Alignment:
Q  339 ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    |||||||||||||  ||||||| ||| || |||||||||||||||||||| |  ||||||||||| |   ||||||| || ||||||||||    
T  31285225 ccaacagggtaattggcaacatgtaagggcacacgattgatcttgttggagatgtatttgactatgtctccaataaaatcatattcatatc 31285135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 339 - 428
Target Start/End: Complemental strand, 26849378 - 26849289
Alignment:
Q  339 ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatat 428  Q
    |||||| |||||||||||||||  ||||||||| | |||||||||||||| ||||  || ||||| ||| ||||||| | || |||||||    
T  26849378 ccaacaaggtaatcagcaacatgcaaaggaacatggttgatcttgttggagacatccttaactattttcccaataaaatggtgttcatat 26849289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 26959796 - 26959743
Alignment:
Q  335 gagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttgga 388  Q
    |||||||||| ||||||||||||||| |||||||||| | || |||||||||||    
T  26959796 gagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttgga 26959743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 429
Target Start/End: Complemental strand, 26647115 - 26647055
Alignment:
Q  369 acacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    |||||||||||||||||||| |  | || |||||||||| ||||||||| |||||||||||    
T  26647115 acacgattgatcttgttggagatgtcttcgactatcttcccaataaacttgtattcatatc 26647055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 429
Target Start/End: Complemental strand, 26753083 - 26753023
Alignment:
Q  369 acacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    |||||||||||||||||||| |  | || |||||||||| ||||||||| |||||||||||    
T  26753083 acacgattgatcttgttggagatgtcttcgactatcttcccaataaacttgtattcatatc 26753023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 26656961 - 26656878
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaactta 92  Q
    |||||||| |||||||| |||| |||||||||    || |||||||||||  |||||||||||||  | |||||||||||||||    
T  26656961 acatcatcgagaatcaaaagaatcttctttctagatagtctttcctttatgattggaattccctcactaacatctcctaactta 26656878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 26762932 - 26762849
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaactta 92  Q
    |||||||| |||||||| |||| |||||||||    || |||||||||||  |||||||||||||  | |||||||||||||||    
T  26762932 acatcatcgagaatcaaaagaatcttctttctagatagtctttcctttatgattggaattccctcactaacatctcctaactta 26762849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 28793355 - 28793272
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaactta 92  Q
    |||||||| |||||||| |||| ||||||| | || |||||||||||||| |  |||||||||||  | ||| |||||||||||    
T  28793355 acatcatcgagaatcaaaagaatcttctttgtatgtagcctttcctttatataaggaattccctcactaacacctcctaactta 28793272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 339 - 429
Target Start/End: Complemental strand, 26143534 - 26143444
Alignment:
Q  339 ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    ||||||||||| |  || |||| ||||  |||| ||||||| |||||||| |  | || |||||||||||||||||||| |||||||||||    
T  26143534 ccaacagggtatttggctacatttaaaaaaacatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatc 26143444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 256
Target Start/End: Complemental strand, 26975818 - 26975700
Alignment:
Q  138 tctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctatggaattataaactgctctggcaagtgttg 237  Q
    ||||| |||||||||  |||||||||||| |  |||||||| |||||   ||  ||||||||||  || ||  ||||||||||||||   ||||||||||    
T  26975818 tctaagccatgtttaactgaattttctctcacatcgtgaaggaaacagttacattcaaattgattagcaatcaaattataaactgcttgagcaagtgttg 26975719  T
Q  238 tctttcccattccaccagt 256  Q
    |||| |||||||| |||||    
T  26975718 tcttacccattcccccagt 26975700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 339 - 429
Target Start/End: Original strand, 27610636 - 27610726
Alignment:
Q  339 ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    |||||||||||||  ||||||| ||| ||   |||| ||||||||||||| |  |||||||||||||   || ||||||||||||||||||    
T  27610636 ccaacagggtaattggcaacatgtaagggttgacgactgatcttgttggagatgtatttgactatctctccagtaaactcgtattcatatc 27610726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 339 - 429
Target Start/End: Original strand, 27718015 - 27718105
Alignment:
Q  339 ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    |||||||||||||  ||||||| ||| ||   |||| || |||||||||| |  |||||||||||||   |||||||||||||||||||||    
T  27718015 ccaacagggtaattggcaacatgtaagggttgacgactggtcttgttggagatgtatttgactatctctccaataaactcgtattcatatc 27718105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 425
Target Start/End: Complemental strand, 25511575 - 25511518
Alignment:
Q  368 aacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattca 425  Q
    |||| |||||||||||||||| |  | || |||||||||||||||||||| |||||||    
T  25511575 aacatgattgatcttgttggagatgtcttcgactatcttctcaataaacttgtattca 25511518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 429
Target Start/End: Complemental strand, 25580359 - 25580298
Alignment:
Q  368 aacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    |||| ||||||| |||||||| |  | || |||||||||||||||||||| |||||||||||    
T  25580359 aacatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatc 25580298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 429
Target Start/End: Original strand, 27427165 - 27427218
Alignment:
Q  376 tgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    ||||||||||||| |  ||||||||||||||  |||||| ||||||||||||||    
T  27427165 tgatcttgttggagatgtatttgactatctttccaataagctcgtattcatatc 27427218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 373 - 429
Target Start/End: Complemental strand, 25483691 - 25483635
Alignment:
Q  373 gattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    ||||||| |||||||| |  |||| |||||||||||||||||||| || ||||||||    
T  25483691 gattgatattgttggagatgtattggactatcttctcaataaacttgtgttcatatc 25483635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 340 - 388
Target Start/End: Original strand, 26893105 - 26893153
Alignment:
Q  340 caacagggtaatcagcaacatataaaggaacacgattgatcttgttgga 388  Q
    ||||||||||||||| |||||||||| ||  | ||||||||||||||||    
T  26893105 caacagggtaatcaggaacatataaaagagaaggattgatcttgttgga 26893153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 286 - 386
Target Start/End: Complemental strand, 28150595 - 28150495
Alignment:
Q  286 cattagatccaacatccaaaaatgaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgtt 385  Q
    ||||| |||||||| | | || |||||||||| || |||| | | |||  || ||||||||||||||| |||||| |||||| |||||| | ||||||||    
T  28150595 cattaaatccaacagctagaagtgaatttactattgggactcgacactgcaggccaacagggtaatcaacaacatgtaaagggacacgactaatcttgtt 28150496  T
Q  386 g 386  Q
    |    
T  28150495 g 28150495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 192 - 268
Target Start/End: Original strand, 29477437 - 29477513
Alignment:
Q  192 tcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccc 268  Q
    ||||||||||| |  || | ||||||||||||||  ||||||||||| || || ||||| ||| |||||||||||||    
T  29477437 tcaaattgatccgaaatcgtattataaactgctcgagcaagtgttgttttccctattccgccaatcccatagatccc 29477513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 438
Target Start/End: Complemental strand, 35723 - 35294
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaacta 108  Q
    |||||||| ||||||||||||||||||||||  |||||||||| ||||||  ||||||||||||| |||||||||||||||| | |||||||||||||||    
T  35723 acatcatctagaatcaacagaaccttctttcggtgaagcctttgctttatgattggaattccctcattgacatctcctaactcaacgtccaattcaacta 35624  T
Q  109 ttttggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctat 208  Q
     |||||||||||||||| | ||||||   |||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| |||||    
T  35623 atttggaaaggagctttccctgtagatgctctaaaccatatttagatgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctat 35524  T
Q  209 ggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccattagatccaacatccaaaaat 308  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||    
T  35523 ggaattataaactgctcttgcaagtgttgtctttccaattccaccagtcccatagatccctagcatctgaacttcaccattagatccaacatccacacat 35424  T
Q  309 gaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttct 408  Q
    ||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  35423 gaagttacttttaggaccctagacttgagaccaacagggtaatcggcaacatataaaggaacatgattgatcttgtttgatacatatttgactatcttct 35324  T
Q  409 caataaactcgtattcatatccactcctac 438  Q
     |||| ||| ||||||||||||| ||||||    
T  35323 taatatacttgtattcatatccattcctac 35294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 9 - 468
Target Start/End: Complemental strand, 43953 - 43494
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaacta 108  Q
    |||||||| ||||| | ||||||||| ||||  |||||||||| ||||||  |||||||||||||||||| |||||| |||| |  ||||||||||||||    
T  43953 acatcatcgagaattagcagaaccttgtttcggtgaagccttttctttattattggaattccctcgttgatatctcccaactcaatgtccaattcaacta 43854  T
Q  109 ttttggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctat 208  Q
     |||||||||||||||||| ||||||   |||||||||| ||||||||||||||| ||||  |||||||||||||| |||| |||||||||||| |||||    
T  43853 atttggaaaggagcttttcctgtagatgctctaaaccatatttagttgaattttcccttacatcgtgaagaaaacataaacaatcaaattgatcagctat 43754  T
Q  209 ggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccattagatccaacatccaaaaat 308  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||| ||||| | ||||    
T  43753 ggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatccctagcatatgaactacaccagtagatccgacatcaagaaat 43654  T
Q  309 gaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttct 408  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| |||||| ||||||||||    
T  43653 ttatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatatagaggaacacgattgattttgctggataaatattttactatcttct 43554  T
Q  409 caataaactcgtattcatatccactcctacccaatcaaaaaagattgagtaaatgcatca 468  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||    
T  43553 caataaactcgtattcatatccattcctacccaatcaaataagtttgagtaaatgcatca 43494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 470
Target Start/End: Complemental strand, 28446 - 27986
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaacta 108  Q
    |||||||| |||||||| ||||| |||||||  |||||||||| |||||    ||||||||||||||||||||||||||||||| | |||||||||||||    
T  28446 acatcatcgagaatcaatagaactttctttcggtgaagcctttgctttaagactggaattccctcgttgacatctcctaacttaacttccaattcaacta 28347  T
Q  109 ttttggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctat 208  Q
     ||||||||||| |||| | | ||||   |||||||||| ||||| ||||||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  28346 atttggaaaggatctttacctatagatgctctaaaccatatttagctgaattttcccttacatcgtgaagaaaacacaaaccatcaaattgatcggctat 28247  T
Q  209 ggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccattagatccaacatccaaaaat 308  Q
      ||||||||||||| || ||||||||||||||||||||||||| | |||| |||||||||| ||||||  | |||||||||||||||||||||| || |    
T  28246 aaaattataaactgcccttgcaagtgttgtctttcccattccacgattcccgtagatccctatcatctgtgcttcaccattagatccaacatccataagt 28147  T
Q  309 gaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttct 408  Q
    ||||||||||||||||||||||| || | ||||||||||||||| ||||||| |||||||||| ||||||||||||| |||| |||||||||||||||||    
T  28146 gaatttacttttaggaccctagattcaacaccaacagggtaatcggcaacatgtaaaggaacatgattgatcttgttagatatatatttgactatcttct 28047  T
Q  409 caataaactcgtattcatatccactcctacccaatcaaaaaagattgagtaaatgcatcaca 470  Q
    | ||||||||| ||||||| ||| ||||||||||||||| ||  ||||||||||||||||||    
T  28046 cgataaactcgcattcatagccattcctacccaatcaaataa-tttgagtaaatgcatcaca 27986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 328 - 467
Target Start/End: Complemental strand, 117470 - 117331
Alignment:
Q  328 tagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcata 427  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||| | |||||||  || |||| |||||||||||||||||||||||||||||||||||    
T  117470 tagactcgagacctacagggtaatccgcaacatataaaggaacacaactgatcttcctgaatacgtatttgactatcttctcaataaactcgtattcata 117371  T
Q  428 tccactcctacccaatcaaaaaagattgagtaaatgcatc 467  Q
     ||| ||||||||||||||| ||| |||||||||||||||    
T  117370 gccattcctacccaatcaaataagtttgagtaaatgcatc 117331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 277; Significance: 1e-154; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 9 - 468
Target Start/End: Original strand, 57480 - 57940
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaacta 108  Q
    |||||||| |||||||||| |||||||||||  |||||||||| ||||||  ||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  57480 acatcatcgagaatcaacaaaaccttctttcggtgaagcctttgctttatgattggaattccctcgttgacatctactaacttaatgtccaattcaacta 57579  T
Q  109 ttttggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctat 208  Q
     ||||||||| || ||| | || |||   |||||||||| ||||| ||||||||| |||| ||||||||||||||||||| |||||||||||||||||||    
T  57580 atttggaaagaagttttccctgcagatgctctaaaccatatttagctgaattttcccttacgtcgtgaagaaaacacaaatcatcaaattgatcggctat 57679  T
Q  209 ggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccattagatccaacatccaaaaat 308  Q
    ||||||| |||||||||| ||||||||||||||||||||||| ||| | || |||||||||||||||||||| ||||||||||||| |||||||| || |    
T  57680 ggaattaaaaactgctctagcaagtgttgtctttcccattcctccaattccgtagatccctagcatctgaacttcaccattagatctaacatccagaagt 57779  T
Q  309 gaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttct 408  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  57780 gaatttacttttaggaccctagattcgataccaacagggtaatcggcaacatataaaggaacatgattgatcttgttagatacatatttgactatcttct 57879  T
Q  409 caataaactcgtattcatatccactcctaccc-aatcaaaaaagattgagtaaatgcatca 468  Q
    ||||||||||| ||||||||||| |||||||| ||| ||| ||| ||||||||||||||||    
T  57880 caataaactcgcattcatatccattcctacccaaatgaaataagtttgagtaaatgcatca 57940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 6e-48; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 530 - 659
Target Start/End: Complemental strand, 4293059 - 4292930
Alignment:
Q  530 ggcaggagtgggcctgcaccctattacaaatgagatagtctaaaaatggagaccaagatgtctttgataaaagaaaagggtgagaagcatagatggcaag 629  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||    
T  4293059 ggcaggagtgggcctgcaccctattacaaatgagagagtctaaaaatggagaccaaaatgtctttgattaaagaaaagtgtgagaagcatagatggcaag 4292960  T
Q  630 ccatctattatactgccacttacatcaatt 659  Q
    |||||| || |||| |||||||| ||||||    
T  4292959 ccatcttttctacttccacttacttcaatt 4292930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 11 - 470
Target Start/End: Original strand, 5090138 - 5090600
Alignment:
Q  11 atcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaactatt 110  Q
    |||||| |||||||| ||||| |||||||| || ||||||| ||||||  |||||||||||||  ||| |||||| ||| ||   |||||| ||| | ||    
T  5090138 atcatcgagaatcaaaagaactttctttctttgtagccttttctttatgattggaattccctcactgatatctccaaacctaatttccaatccaattgtt 5090237  T
Q  111 ttggaaaggagcttttcttgtagagattctaaaccatg---tttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggcta 207  Q
    ||  |||||| |||    || ||| | ||||||||||    |||||||||||||||||| |  | | |||||||||| | ||  ||||||||||  || |    
T  5090238 ttaaaaaggaccttactctgaagatactctaaaccatccactttagttgaattttctctcacattgggaagaaaacaaagacattcaaattgatgagcaa 5090337  T
Q  208 tggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccattagatccaacatccaaaaa 307  Q
    || |||| |||| |||| |  ||||||| || || |||||||| ||||||||||||||||||||||| || || | | ||||||| |||| |||||  |     
T  5090338 tgaaattgtaaattgcttttccaagtgtggttttacccattcctccagtcccatagatccctagcatttggactttatcattagaaccaatatccagtag 5090437  T
Q  308 tgaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttc 407  Q
    ||||| || ||| || || | || ||| |  ||||| |||||||||||||||| |||||||    |||||||||||||||| |||||| |||||||| ||    
T  5090438 tgaatataatttcagaacacgaggctctaatccaaccgggtaatcagcaacatgtaaaggagtgtgattgatcttgttggagacatatgtgactatcatc 5090537  T
Q  408 tcaataaactcgtattcatatccactcctacccaatcaaaaaagattgagtaaatgcatcaca 470  Q
    | |||||||||||||||||||||| ||||| | ||||| | ||  |||| |||||||||||||    
T  5090538 tgaataaactcgtattcatatccagtcctatcaaatcagataaatttgaataaatgcatcaca 5090600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 371 - 429
Target Start/End: Original strand, 18731048 - 18731106
Alignment:
Q  371 acgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    |||| ||||||||||||| ||||||||||||||||| |||||||||| |||||||||||    
T  18731048 acgactgatcttgttggagacatatttgactatcttttcaataaacttgtattcatatc 18731106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 371 - 429
Target Start/End: Original strand, 18655021 - 18655079
Alignment:
Q  371 acgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    |||| ||||||||||||| |||||||||||||||||  ||||||||| |||||||||||    
T  18655021 acgactgatcttgttggagacatatttgactatctttccaataaacttgtattcatatc 18655079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 18654659 - 18654742
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaactta 92  Q
    |||||||| |||||||| |||| ||||||| | || |||||||||||||| |  |||||||||||  | ||| |||||||||||    
T  18654659 acatcatcgagaatcaaaagaatcttctttgtatgtagcctttcctttatataaggaattccctcactaacacctcctaactta 18654742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 18678742 - 18678825
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaactta 92  Q
    |||||||| |||||||| |||| ||||||| | || |||||||||||||| |  |||||||||||  | ||| |||||||||||    
T  18678742 acatcatcgagaatcaaaagaatcttctttgtatgtagcctttcctttatataaggaattccctcactaacacctcctaactta 18678825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 18698582 - 18698665
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaactta 92  Q
    |||||||| |||||||| |||| ||||||| | || |||||||||||||| |  |||||||||||  | ||| |||||||||||    
T  18698582 acatcatcgagaatcaaaagaatcttctttgtatgcagcctttcctttatataaggaattccctcactaacacctcctaactta 18698665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 18730686 - 18730769
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaactta 92  Q
    |||||||| |||||||| |||| ||||||| | || |||||||||||||| |  |||||||||||  | ||| |||||||||||    
T  18730686 acatcatcgagaatcaaaagaatcttctttgtatgtagcctttcctttatatagggaattccctcactaacacctcctaactta 18730769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 339 - 429
Target Start/End: Original strand, 18698912 - 18699002
Alignment:
Q  339 ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    |||||||||||||  ||||||| ||| ||   |||| ||||||||||||| || ||||||||||| |   ||||||||| |||||||||||    
T  18698912 ccaacagggtaattggcaacatgtaagggctgacgactgatcttgttggagacgtatttgactatatctccaataaacttgtattcatatc 18699002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 371 - 429
Target Start/End: Original strand, 18723629 - 18723687
Alignment:
Q  371 acgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    |||| |||||||||||   |||||||||||||||||  ||||||||| |||||||||||    
T  18723629 acgactgatcttgttgttgacatatttgactatctttccaataaacttgtattcatatc 18723687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 429
Target Start/End: Complemental strand, 18074390 - 18074337
Alignment:
Q  376 tgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    ||||||||||||| |  ||||||||||||||  |||||| ||||||||||||||    
T  18074390 tgatcttgttggagatgtatttgactatctttccaataagctcgtattcatatc 18074337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 9e-41; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 12 - 445
Target Start/End: Complemental strand, 3280652 - 3280219
Alignment:
Q  12 tcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaactattt 111  Q
    |||||||||| ||| |||||||| || |  || ||||||| ||||||  |||||||||||||  |   |||||||||||||  ||||||| ||||  |||    
T  3280652 tcatcaagaaccaatagaacctttttccggtgtagcctttgctttatgattggaattccctcactactatctcctaacttaatgtccaatccaacagttt 3280553  T
Q  112 tggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctatgga 211  Q
    ||||||| |  |  | ||| |||   |||| ||||||||| | |||||||||||| |  | |||||||||||| | ||  ||||||||||  || ||| |    
T  3280552 tggaaagaaaatccttttggagatgctctagaccatgttttgctgaattttctctcacattgtgaagaaaacatacacattcaaattgattagcaatgaa 3280453  T
Q  212 attataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccattagatccaacatccaaaaatgaa 311  Q
    ||||||||||||||| ||||| |||||||| |||||||| |||   |||||||| |||| |||||  || |||  ||||||| |||| || | || ||||    
T  3280452 attataaactgctcttgcaagagttgtcttacccattcctccaagtccatagatacctatcatcttgacttcataattagatgcaacttctagaagtgaa 3280353  T
Q  312 tttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaa 411  Q
    |||||||| ||||| | |||||  |  ||||| ||||||||  |||||| ||||||| ||||||| |||||||||||||||| ||||||||| | | | |    
T  3280352 tttactttaaggactcgagactgcatgccaaccgggtaatcgacaacatgtaaaggagcacgatttatcttgttggatacatttttgactatatccccta 3280253  T
Q  412 taaactcgtattcatatccactcctacccaatca 445  Q
    |||||| ||||| |||| || |||| ||||||||    
T  3280252 taaacttgtattgatattcattcctgcccaatca 3280219  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 17699958 - 17699899
Alignment:
Q  143 accatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatc 202  Q
    |||||| ||| ||| |||||||||||| || | ||||||||||| |||||||||||||||    
T  17699958 accatggttaattgcattttctcttatatcatcaagaaaacacacaccatcaaattgatc 17699899  T

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Target: chr5 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 16691863 - 16691604
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaacta 108  Q
    |||||||| |||||||| |||||||| |||   || |||||||  |||||  |||||||||| ||  | |||| ||||||||||  ||| ||| |||       
T  16691863 acatcatcgagaatcaaaagaacctttttttgttgtagcctttgttttattattggaattccttcactaacatgtcctaacttaatgtctaatccaatgg 16691764  T
Q  109 ttttggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctat 208  Q
    |||||||||||||| ||||||| |||  |||||| |||||||||| |||||||||||| | ||| ||||||||||||||||  ||||||||||| || ||    
T  16691763 ttttggaaaggagcctttcttgaagatgttctaagccatgtttagatgaattttctctcacgtcatgaagaaaacacaaacattcaaattgatcagcaat 16691664  T
Q  209 ggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccc 268  Q
      ||||||||| |||||  ||||||||||| || || ||||| ||| | |||| ||||||    
T  16691663 caaattataaattgctcgagcaagtgttgttttaccgattcctccaattccatggatccc 16691604  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 533 - 608
Target Start/End: Complemental strand, 12107147 - 12107070
Alignment:
Q  533 aggagtgggcctgcaccctat--tacaaatgagatagtctaaaaatggagaccaagatgtctttgataaaagaaaagg 608  Q
    ||||| |||||||||||||||  |||| |||||| |||||||||| | |||| || | |||| |||||||||||||||    
T  12107147 aggagagggcctgcaccctatattacatatgagagagtctaaaaaagaagactaaaaagtctctgataaaagaaaagg 12107070  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 28126860 - 28127089
Alignment:
Q  8 gacatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctcgttgacatctcctaacttaccgtccaattcaact 107  Q
    |||||||||||||||||| |||| |||||||||    |||||||  |||||  ||| |||||||||  | ||| |||||||||||  ||||||| |||||    
T  28126860 gacatcatcaagaatcaaaagaatcttctttctgcatagcctttgttttatgattgcaattccctcactaacacctcctaacttaatgtccaatccaact 28126959  T
Q  108 attttggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggcta 207  Q
     ||||  |||||||||||||||| |||  ||  |||  || |  ||||||| | ||||| |  || |  |||||||| ||||| ||||||||||| || |    
T  28126960 gttttcaaaaggagcttttcttggagatgtttcaaattatatggagttgaaatctctctcacatcttctagaaaacataaaccttcaaattgatcagcaa 28127059  T
Q  208 tggaattataaactgctctggcaagtgttg 237  Q
    || ||||||||| |||| | ||||||||||    
T  28127060 tgaaattataaattgcttttgcaagtgttg 28127089  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 339 - 429
Target Start/End: Original strand, 267856 - 267946
Alignment:
Q  339 ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    |||||||||||||  ||||||| ||| ||  ||||| ||||||||||||| |  |||||||||||||   ||||||||| |||||||||||    
T  267856 ccaacagggtaattggcaacatgtaagggctcacgactgatcttgttggagatgtatttgactatctctccaataaacttgtattcatatc 267946  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 429
Target Start/End: Original strand, 28127220 - 28127281
Alignment:
Q  368 aacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    ||||||||||||| ||| |||||  | ||||| |||||||| |||||||| |||||||||||    
T  28127220 aacacgattgatcctgtcggatatgtctttgattatcttctgaataaacttgtattcatatc 28127281  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 26136564 - 26136508
Alignment:
Q  329 agactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgtt 385  Q
    ||||||||| ||||| |||| ||| ||||||| |||| ||||||| |||||||||||    
T  26136564 agactcgagcccaacggggtgatcggcaacatgtaaaagaacacggttgatcttgtt 26136508  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 110 - 238
Target Start/End: Complemental strand, 26136783 - 26136655
Alignment:
Q  110 tttggaaaggagcttttcttgtagagattctaaaccatgtttagttgaattttctcttatgtcgtgaagaaaacacaaaccatcaaattgatcggctatg 209  Q
    |||||| |||||||  ||||| ||| ||||||| |||| ||||  |||||||||||  |  | |||||| || ||||| || ||||||||||| || ||     
T  26136783 tttggagaggagctgctcttggagatattctaagccatatttaactgaattttctcgcacattgtgaaggaagcacaatccttcaaattgatccgcaatc 26136684  T
Q  210 gaattataaactgctctggcaagtgttgt 238  Q
     |||||||||||||||  | |||||||||    
T  26136683 aaattataaactgctcgagtaagtgttgt 26136655  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 28163729 - 28163789
Alignment:
Q  177 agaaaacacaaaccatcaaattgatcggctatggaattataaactgctctggcaagtgttg 237  Q
    |||||||| ||||| ||||||||||| || ||| ||||||||| |||| | ||||||||||    
T  28163729 agaaaacataaaccttcaaattgatcagcaatgaaattataaattgcttttgcaagtgttg 28163789  T

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Target: scaffold0349 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 2725 - 2789
Alignment:
Q  9 acatcatcaagaatcaacagaaccttctttctctgaagcctttcctttatctttggaattccctc 73  Q
    ||||||||||||||||| |||||||||||||| || |||||||||||||| |  |||||||||||    
T  2725 acatcatcaagaatcaaaagaaccttctttctatgtagcctttcctttatataaggaattccctc 2789  T

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Target: scaffold0349; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 339 - 429
Target Start/End: Original strand, 3055 - 3145
Alignment:
Q  339 ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    |||||||||||||  ||||||| ||| ||   |||| || |||||||||| |  |||||||||||||   |||||||||||||||||||||    
T  3055 ccaacagggtaattggcaacatgtaagggttgacgactggtcttgttggagatgtatttgactatctctccaataaactcgtattcatatc 3145  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 533 - 609
Target Start/End: Complemental strand, 8058900 - 8058824
Alignment:
Q  533 aggagtgggcctgcaccctattacaaatgagatagtctaaaaatggagaccaagatgtctttgataaaagaaaaggg 609  Q
    ||||| ||||||||||||||||||| |||||| |||||||||  | |||| || | || | ||||||||||||||||    
T  8058900 aggagagggcctgcaccctattacatatgagagagtctaaaacagaagactaaaaagtgtctgataaaagaaaaggg 8058824  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 339 - 431
Target Start/End: Complemental strand, 31905717 - 31905625
Alignment:
Q  339 ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatcca 431  Q
    ||||| ||||| ||||||||   ||||| ||||||||| ||||| ||||| |||| ||  || |||||  ||||||||||||| |||||||||    
T  31905717 ccaactgggtagtcagcaacgggtaaagcaacacgattcatcttcttggaaacatgttcaacaatctttccaataaactcgtactcatatcca 31905625  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 429
Target Start/End: Complemental strand, 60198 - 60145
Alignment:
Q  376 tgatcttgttggatacatatttgactatcttctcaataaactcgtattcatatc 429  Q
    ||||||||||||| |  ||||||||||||||  |||||| ||||||||||||||    
T  60198 tgatcttgttggagatgtatttgactatctttccaataagctcgtattcatatc 60145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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