View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3575_low_22 (Length: 222)

Name: NF3575_low_22
Description: NF3575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3575_low_22
NF3575_low_22
[»] chr4 (6 HSPs)
chr4 (17-201)||(23669242-23669427)
chr4 (17-73)||(33018660-33018716)
chr4 (17-72)||(11883012-11883067)
chr4 (34-63)||(23668227-23668256)
chr4 (31-60)||(50123934-50123963)
chr4 (34-66)||(42859747-42859779)
[»] chr8 (5 HSPs)
chr8 (17-73)||(9370098-9370154)
chr8 (34-65)||(9404156-9404187)
chr8 (34-65)||(9406317-9406348)
chr8 (34-64)||(9369094-9369124)
chr8 (34-66)||(9406857-9406889)
[»] chr7 (1 HSPs)
chr7 (17-72)||(47817420-47817475)
[»] chr6 (1 HSPs)
chr6 (17-63)||(6535297-6535343)
[»] chr3 (4 HSPs)
chr3 (17-63)||(12008931-12008977)
chr3 (17-72)||(51985799-51985854)
chr3 (34-66)||(10670866-10670898)
chr3 (35-67)||(52743676-52743708)
[»] chr5 (1 HSPs)
chr5 (17-72)||(43070205-43070260)
[»] chr1 (3 HSPs)
chr1 (34-65)||(28700030-28700061)
chr1 (34-66)||(6815261-6815293)
chr1 (17-73)||(47124619-47124675)
[»] chr2 (1 HSPs)
chr2 (34-66)||(11873281-11873313)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 23669242 - 23669427
Alignment:
Q  17 aaaagaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcccgagtttagagttggattcagatataaacaatnnnnnnn-tacc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||        ||||    
T  23669242 aaaagaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcccgattttagagttggattcagatataaacaataaaaaaaatacc 23669341  T
Q  116 caagttaaggttaagatcgagttcaggtcacatatatactactcagtctaactcgtcttttgtacatccctaaaacatgttaagat 201  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23669342 caagttaaggttaagatcaagttcaggtcacatatatactactcagtctaactcgtcttttgtacatccctaaaacatgttaagat 23669427  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 33018660 - 33018716
Alignment:
Q  17 aaaagaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgccc 73  Q
    ||||||||| |||||| ||||||||||||| |||||||||||||||| || ||||||    
T  33018660 aaaagaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgccc 33018716  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 11883012 - 11883067
Alignment:
Q  17 aaaagaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcc 72  Q
    ||||||||  |||||| ||||||||||||| |||||||||||||||| || |||||    
T  11883012 aaaagaggccatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 11883067  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 23668256 - 23668227
Alignment:
Q  34 gtaggagacctattaaggtctcccacccta 63  Q
    ||||||||||||||||||||||||||||||    
T  23668256 gtaggagacctattaaggtctcccacccta 23668227  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 60
Target Start/End: Complemental strand, 50123963 - 50123934
Alignment:
Q  31 accgtaggagacctattaaggtctcccacc 60  Q
    ||||||||||||||||||||||||||||||    
T  50123963 accgtaggagacctattaaggtctcccacc 50123934  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 42859779 - 42859747
Alignment:
Q  34 gtaggagacctattaaggtctcccaccctagac 66  Q
    |||||||||||||||||||||||||| ||||||    
T  42859779 gtaggagacctattaaggtctcccacactagac 42859747  T

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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 9370098 - 9370154
Alignment:
Q  17 aaaagaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgccc 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9370098 aaaagaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgccc 9370154  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 9404187 - 9404156
Alignment:
Q  34 gtaggagacctattaaggtctcccaccctaga 65  Q
    ||||||||||||||||||||||||||||||||    
T  9404187 gtaggagacctattaaggtctcccaccctaga 9404156  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 9406348 - 9406317
Alignment:
Q  34 gtaggagacctattaaggtctcccaccctaga 65  Q
    ||||||||||||||||||||||||||||||||    
T  9406348 gtaggagacctattaaggtctcccaccctaga 9406317  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 64
Target Start/End: Complemental strand, 9369124 - 9369094
Alignment:
Q  34 gtaggagacctattaaggtctcccaccctag 64  Q
    |||||||||||||||||||||||||||||||    
T  9369124 gtaggagacctattaaggtctcccaccctag 9369094  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 9406857 - 9406889
Alignment:
Q  34 gtaggagacctattaaggtctcccaccctagac 66  Q
    |||||||||||||||||||||||||| ||||||    
T  9406857 gtaggagacctattaaggtctcccacactagac 9406889  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 47817475 - 47817420
Alignment:
Q  17 aaaagaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcc 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47817475 aaaagaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcc 47817420  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 6535297 - 6535343
Alignment:
Q  17 aaaagaggttatgcaccgtaggagacctattaaggtctcccacccta 63  Q
    ||||||||| |||||| ||||||||||||| ||||||||||||||||    
T  6535297 aaaagaggtcatgcacggtaggagacctataaaggtctcccacccta 6535343  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 12008977 - 12008931
Alignment:
Q  17 aaaagaggttatgcaccgtaggagacctattaaggtctcccacccta 63  Q
    ||||||||| |||||| ||||||||||||| ||||||||||||||||    
T  12008977 aaaagaggtcatgcacggtaggagacctataaaggtctcccacccta 12008931  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 51985854 - 51985799
Alignment:
Q  17 aaaagaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcc 72  Q
    ||||||||| ||| || ||||||||||||| ||| |||||||||||| ||||||||    
T  51985854 aaaagaggtcatgtacggtaggagacctataaagatctcccaccctaaacaccgcc 51985799  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 10670866 - 10670898
Alignment:
Q  34 gtaggagacctattaaggtctcccaccctagac 66  Q
    |||||||||||||||||||||||||| ||||||    
T  10670866 gtaggagacctattaaggtctcccacactagac 10670898  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 52743708 - 52743676
Alignment:
Q  35 taggagacctattaaggtctcccaccctagaca 67  Q
    ||||||||||||||||||||| |||||||||||    
T  52743708 taggagacctattaaggtctctcaccctagaca 52743676  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 43070205 - 43070260
Alignment:
Q  17 aaaagaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcc 72  Q
    ||||||||| ||| || ||||||||||||| |||||||||||||||| || |||||    
T  43070205 aaaagaggtcatgtacggtaggagacctataaaggtctcccaccctaaacgccgcc 43070260  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 65
Target Start/End: Original strand, 28700030 - 28700061
Alignment:
Q  34 gtaggagacctattaaggtctcccaccctaga 65  Q
    ||||||||||||||||||||||||||||||||    
T  28700030 gtaggagacctattaaggtctcccaccctaga 28700061  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 6815293 - 6815261
Alignment:
Q  34 gtaggagacctattaaggtctcccaccctagac 66  Q
    ||||||||||||| |||||||||||||||||||    
T  6815293 gtaggagacctatcaaggtctcccaccctagac 6815261  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 47124675 - 47124619
Alignment:
Q  17 aaaagaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgccc 73  Q
    ||||||||| |||||| |||| ||| |||| |||||||||||||||| || ||||||    
T  47124675 aaaagaggtcatgcacagtagaagatctataaaggtctcccaccctaaacgccgccc 47124619  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 11873313 - 11873281
Alignment:
Q  34 gtaggagacctattaaggtctcccaccctagac 66  Q
    ||||||||||||| |||||||||||||||||||    
T  11873313 gtaggagacctatcaaggtctcccaccctagac 11873281  T

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