View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3575_low_4 (Length: 411)
Name: NF3575_low_4
Description: NF3575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3575_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 40277083 - 40277477
Alignment:
| Q |
11 |
aatgagaaatgtgaatttgacccattttcaactcgaattccaagtttagagcacttttctaaaggaaatattatgtgttttacgtctagagaggagactt |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
40277083 |
aatgagaaatgtgaatttgacccattttcaactcgaattccaagtttagagcacttttctaatggaaatattatgtgttttaagtctagagaggagactt |
40277182 |
T |
|
| Q |
111 |
cagatcaacttttagaggcattgaaggatgatgattgttctatgattggggtgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatggg |
210 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40277183 |
cagatcaacttttagaggcattcaaggatgatgattgttctatgattggcttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatggg |
40277282 |
T |
|
| Q |
211 |
tgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaatatcacagcaatgcaagatgaaattgctgactcc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40277283 |
tgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgactcc |
40277382 |
T |
|
| Q |
311 |
ttgaatataagatttgatgaagccgaaagagcaagactaatatcttccaccatagaaaatatggatcgtccaatgcttgtgatctttgatgatgt |
405 |
Q |
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| T |
40277383 |
ttgaatattagatttgatgaagccgaaagagcaagactaatatcttccaccatagaaaatatggatcgtccaatacttgtgatctttgatgatgt |
40277477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 15 - 405
Target Start/End: Original strand, 40376229 - 40376631
Alignment:
| Q |
15 |
agaaatgtgaatttgacccattttcaactcgaattccaagtttagagcacttttctaaaggaaatattat---gtgttttacgtctagagaggagacttc |
111 |
Q |
| |
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|||||||| | ||||| |||||||||| | ||||||||||||||| ||||| ||| |||||||| | | |||||| | ||| | |||| || |||| |
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| T |
40376229 |
agaaatgtaattttgatccattttcaattataattccaagtttagaacacttctctttaggaaataattttgagtgtttcaagtcgacagagaaggcttc |
40376328 |
T |
|
| Q |
112 |
agatcaacttttagaggcattgaaggatgatgattgttctatgattggggtgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggt |
211 |
Q |
| |
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|||| ||||||| || ||| || | |||||| ||||| ||| || || |||| |||| || | ||||||||||| ||||||||| || ||||||| |
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| T |
40376329 |
agatgaacttttggaagcactgcaagatgataattgtcgtataataggattgtacggtaggcgtgactctggtaaaactacattggtgagagtaatgggt |
40376428 |
T |
|
| Q |
212 |
gagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaatatcacagcaatgcaagatgaaattgctgactcct |
311 |
Q |
| |
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|||||||||| || ||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40376429 |
gagaaagtcatgtttttaaatatttttgatgagattttatttgtcaatgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgactcct |
40376528 |
T |
|
| Q |
312 |
tgaatataagatttga---------tgaagccgaaagagcaagactaatatcttccaccatagaaaatatggatcgtccaatgcttgtgatctttgatga |
402 |
Q |
| |
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|||||||||||||||| |||||| |||||||||||| ||||| ||||| |||||||||||||||| ||| || ||||||||||||||||| |
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| T |
40376529 |
tgaatataagatttgatagaaacagtgaagctgaaagagcaagaaaaatattatccacaatagaaaatatggatcatcctatacttgtgatctttgatga |
40376628 |
T |
|
| Q |
403 |
tgt |
405 |
Q |
| |
|
||| |
|
|
| T |
40376629 |
tgt |
40376631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 15 - 405
Target Start/End: Original strand, 40386474 - 40386876
Alignment:
| Q |
15 |
agaaatgtgaatttgacccattttcaactcgaattccaagtttagagcacttttctaaaggaaatattat---gtgttttacgtctagagaggagacttc |
111 |
Q |
| |
|
|||||||| | ||||| |||||||||||| ||||||||||||||| ||||| ||| |||||||| | | |||||| | ||| | ||| || |||| |
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| T |
40386474 |
agaaatgtaattttgagccattttcaactacaattccaagtttagaacacttctctttaggaaataatttcgagtgtttcaagtcgacggagaaggcttc |
40386573 |
T |
|
| Q |
112 |
agatcaacttttagaggcattgaaggatgatgattgttctatgattggggtgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggt |
211 |
Q |
| |
|
|||| ||||||| |||||| || | |||||| |||||| |||||| || |||| |||| || | ||||||||||| | |||||||||| ||||| |
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| T |
40386574 |
agatgaacttttggaggcactgcaagatgataattgttgtatgataggattgtacggtaggcgtgactctggtaaaactacgttggtgaaagtaatggaa |
40386673 |
T |
|
| Q |
212 |
gagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaatatcacagcaatgcaagatgaaattgctgactcct |
311 |
Q |
| |
|
|||||||| | ||||| ||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40386674 |
cagaaagtccaatatttgaatatttttgatgagattttatttgtcaatgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgactcct |
40386773 |
T |
|
| Q |
312 |
tgaatataagatttga---------tgaagccgaaagagcaagactaatatcttccaccatagaaaatatggatcgtccaatgcttgtgatctttgatga |
402 |
Q |
| |
|
|||||||||||||||| |||||| | |||||||||| ||||| ||||| |||||| |||||||||||||||| ||||| ||||||||||| |
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| T |
40386774 |
tgaatataagatttgatagaaacagtgaagctggaagagcaagaagaatattatccacaatagaagatatggatcgtccaatacttgttatctttgatga |
40386873 |
T |
|
| Q |
403 |
tgt |
405 |
Q |
| |
|
||| |
|
|
| T |
40386874 |
tgt |
40386876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 15 - 405
Target Start/End: Original strand, 40333196 - 40333598
Alignment:
| Q |
15 |
agaaatgtgaatttgacccattttcaactcgaattccaagtttagagcacttttctaaaggaaatattat---gtgttttacgtctagagaggagacttc |
111 |
Q |
| |
|
|||||||| | ||||| |||||||||||| ||||||||||||||| ||||| ||| |||||||| | | |||||| | ||| | ||| || |||| |
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|
| T |
40333196 |
agaaatgtaattttgatccattttcaactacaattccaagtttagaacacttctctttaggaaataatttcgagtgtttcaagtcgacggagaaggcttc |
40333295 |
T |
|
| Q |
112 |
agatcaacttttagaggcattgaaggatgatgattgttctatgattggggtgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggt |
211 |
Q |
| |
|
|||| ||||||| |||||| || | |||||| |||||| |||||| || |||| |||| || | ||||||||||| | |||||||||| ||||| |
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|
| T |
40333296 |
agatgaacttttggaggcactgcaagatgataattgttgtatgataggattgtacggtaggcgtgactctggtaaaactacgttggtgaaagtaatggaa |
40333395 |
T |
|
| Q |
212 |
gagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaatatcacagcaatgcaagatgaaattgctgactcct |
311 |
Q |
| |
|
|||||||| | ||||| ||||||||| |||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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|
| T |
40333396 |
cagaaagtccaatatttgaatatttttgatgagattttatttgtcaatgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgacttct |
40333495 |
T |
|
| Q |
312 |
tgaatataagatttga---------tgaagccgaaagagcaagactaatatcttccaccatagaaaatatggatcgtccaatgcttgtgatctttgatga |
402 |
Q |
| |
|
||||||||||||| || |||| | | |||||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||||||||||| |
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| T |
40333496 |
tgaatataagattagatagaaacagtgaaactggaagagcaagaaaaatattatccacaatagaagatatggatcgtccaatacttgtgatctttgatga |
40333595 |
T |
|
| Q |
403 |
tgt |
405 |
Q |
| |
|
||| |
|
|
| T |
40333596 |
tgt |
40333598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 40598499 - 40598208
Alignment:
| Q |
17 |
aaatgtgaatttgacccattttcaactcgaattccaagtttagagcacttttctaaaggaaatattatgtgttttacgtctagagaggagacttcagatc |
116 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||||||||||||||||||||| ||| |||||||||| ||||||||| ||||||||| |||||||||||| |
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| T |
40598499 |
aaatgcgaatttgatccattttcaactccaattccaagtttagagcacttctcttcaggaaatattttgtgttttaagtctagagataagacttcagatc |
40598400 |
T |
|
| Q |
117 |
aacttttagaggcattgaaggatgatgattgttctatgattggggtgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggtgagaa |
216 |
Q |
| |
|
|| ||||||||||| || |||||| |||| ||||||||||| ||||||||| |||| |||||||| ||||| |||| ||||||||||||||||| |
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|
| T |
40598399 |
aaattttagaggcactgcgagatgataattgctctatgattggattgtatggtagcaagggctctggtaagacagcgttggcaaaagcaatgggtgagaa |
40598300 |
T |
|
| Q |
217 |
agtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaatatcacagcaatgcaagatgaaattgctgact |
308 |
Q |
| |
|
||| ||| || |||| ||||||||||| ||||||||| || ||||| ||| || ||||||| | | |||||||| ||||||||||||| |
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|
| T |
40598299 |
agttaagcatctaaagatttttcatgaggttttatttgccacggtgacgcaaaacctgaatatcagaactatgcaagaagaaattgctgact |
40598208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 40257681 - 40257607
Alignment:
| Q |
164 |
tatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatattttt |
238 |
Q |
| |
|
||||| ||| |||| |||||||||||| |||||||||||| | |||||||||| |||||||||||| |||||| |
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|
| T |
40257681 |
tatgggaagaagggctctggtaaaacaaagttggtgaaagcagttggtgagaaagccaagtatttaaagattttt |
40257607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 40325801 - 40325898
Alignment:
| Q |
179 |
tctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaa |
276 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||| |||||||| |||||| | || ||||| ||||| |||||||| ||| |||| || ||| |||||| |
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|
| T |
40325801 |
tctggtaaaacaacattagtgaaagcagtggctgagaaagccaagtactccaagttttttgatgaagttttatttatcaatgtgtcccaaaacccaaa |
40325898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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