View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3575_low_5 (Length: 392)
Name: NF3575_low_5
Description: NF3575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3575_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 21138351 - 21137974
Alignment:
| Q |
1 |
aggaacgttgttcgaacggaatctgtcaggctagtttggagtacttttccaaattcccactccttaactttttcatgaaacttttcctgacagaaatgct |
100 |
Q |
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| T |
21138351 |
aggaaggttgttcgaacggaatctgtcaggctagtttggagtactctttcaaattccaactccttaactttttcatgaaacttttcctgactgaaatgct |
21138252 |
T |
|
| Q |
101 |
tattaataatgtctccaaaaggaaaattatcaccccagattgatgtggtatcatcattaacactgctattgatctcagtgaaaaatgaagtccacatttc |
200 |
Q |
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|||| |||| | |||| ||||||||||||||| |||||| ||||||||||||| ||| | |||| ||||||||||||||||||||||| ||||||||||| |
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| T |
21138251 |
tattgataaagcctccgaaaggaaaattatcatcccagactgatgtggtatcaccatcaccactactattgatctcagtgaaaaatgacgtccacatttc |
21138152 |
T |
|
| Q |
201 |
atctacccattccgaagaacattgctggttgtttccaggaatttgtacaagagctgaacttgaaacctccagtcgaggccgttttacttcaacggttttg |
300 |
Q |
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||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21138151 |
atccacccattccgaagaaccttgctggttgtttccaggaatttgtacaggagctgaacttgaaacctccagtcgaggccgttttacttcaacggttttg |
21138052 |
T |
|
| Q |
301 |
aggggcgtgtccggggaattattggttggagcttcctgtggagagttccttacacatctttgaccattatgttcaagc |
378 |
Q |
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| T |
21138051 |
aggggcgtgtccgggaaattattggttggagcttcctgtggagagttccttacacatttttgaccattatgttcaagc |
21137974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 36767231 - 36767055
Alignment:
| Q |
27 |
caggctagtttggagtacttttccaaattcccactccttaactttttcatgaaacttttcctgacagaaatgcttattaataatgtctccaaaaggaaaa |
126 |
Q |
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| T |
36767231 |
caggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactgaaatgcttgtcaataaggtctccaagtggaaaa |
36767132 |
T |
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| Q |
127 |
ttatcaccccagattgatgtggtatcatcattaacactgctattgatctcagtgaaaaatgaagtccacatttcatc |
203 |
Q |
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|| ||| ||||||| | | | |||||||| | |||||| | |||||||||| |||||||| |||||||| ||||| |
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| T |
36767131 |
ttgtcatgccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaaaatgatgtccacatatcatc |
36767055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 202
Target Start/End: Complemental strand, 36771796 - 36771654
Alignment:
| Q |
60 |
ctccttaactttttcatgaaacttttcctgacagaaatgcttattaataatgtctccaaaaggaaaattatcaccccagattgatgtggtatcatcatta |
159 |
Q |
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||||||| ||||||||||| | |||||| || ||||||||||| ||||| |||||||| |||||| || |||||||| ||| | |||||||| | |
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| T |
36771796 |
ctccttagctttttcatgatgcatttccttaccgaaatgcttatcaataaggtctccaagtggaaaaccgacatcccagattaatgcgtcatcatcatca |
36771697 |
T |
|
| Q |
160 |
acactgctattgatctcagtgaaaaatgaagtccacatttcat |
202 |
Q |
| |
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| T |
36771696 |
ccactaccatttatctcggtaaaaagtgatgtccacatttcat |
36771654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 36771550 - 36771510
Alignment:
| Q |
312 |
cggggaattattggttggagcttcctgtggagagttcctta |
352 |
Q |
| |
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||||||||||||||||| ||||||||||| |||||||||| |
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| T |
36771550 |
cggggaattattggttgtagcttcctgtgctgagttcctta |
36771510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 23447087 - 23446746
Alignment:
| Q |
11 |
ttcgaacggaatctgtcaggctagtttggagtacttttccaaattcccactccttaactttttcatgaaacttttcctgacagaaatgcttattaataat |
110 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| || | ||| | |||||||||||||||| ||||||||||| | | ||||| ||||| |||| |
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| T |
23447087 |
ttcgaatggaatctgtcaggctagtttggagtaccctttctaatccaaactccttaactttttcctgaaacttttcgtccctgaaattcttatcgataag |
23446988 |
T |
|
| Q |
111 |
gtctccaaaaggaaaattatcaccccagattgatgtggtatcatcattaacactgctattgatctcagtgaaaaatgaagtccacatttcatctacccat |
210 |
Q |
| |
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|| || ||||| |||| |||| |||| |||||||||| |||| ||| | |||| ||||||||| |||||||||||| |||||||||||||| |||| | |
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| T |
23446987 |
gttacctaaagggaaatgatcatcccaaattgatgtggcatcaccatcaccactactattgatcgtagtgaaaaatgatgtccacatttcatccacccct |
23446888 |
T |
|
| Q |
211 |
tccgaagaacattgctggttgtttccaggaatttgtacaagagctgaacttgaaacctccagtcgaggccgttttacttcaacggttttgaggggcgtgt |
310 |
Q |
| |
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|| ||||||| ||||| | |||| |||| | || | | ||| ||||||||||||| ||||||||||| |||||||||||| | ||||||| |||| |
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| T |
23446887 |
tcagaagaactatgctgactctttcgaggactctgaaaaggaggtgaacttgaaaccaccagtcgaggcttttttacttcaacattgatgaggggtgtgt |
23446788 |
T |
|
| Q |
311 |
ccggggaattattggttggagcttcctgtggagagttcctta |
352 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||| |||| |
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| T |
23446787 |
ccggggaattattggttggatcttcctttggagagttactta |
23446746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 2 - 352
Target Start/End: Original strand, 23433062 - 23433412
Alignment:
| Q |
2 |
ggaacgttgttcgaacggaatctgtcaggctagtttggagtacttttccaaattcccactccttaactttttcatgaaacttttcctgacagaaatgctt |
101 |
Q |
| |
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|||| ||||||||||| |||| ||| |||||||||||||||||| || | |||||| |||||||||||||||| ||||||||||| || ||| ||||| |
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| T |
23433062 |
ggaaggttgttcgaacagaatttgttaggctagtttggagtactctttctaattccatctccttaactttttcaaaaaacttttccttactgaattgctt |
23433161 |
T |
|
| Q |
102 |
attaataatgtctccaaaaggaaaattatcaccccagattgatgtggtatcatcattaacactgctattgatctcagtgaaaaatgaagtccacatttca |
201 |
Q |
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| T |
23433162 |
atcaataaggtctccgaatgggaaattattatcatagactgatgtggcattaccatcaacaatgcttttaatctcagtgaaaaacgatgtccacatttca |
23433261 |
T |
|
| Q |
202 |
tctacccattccgaagaacattgctggttgtttccaggaatttgtacaagagctgaacttgaaacctccagtcgaggccgttttacttcaacggttttga |
301 |
Q |
| |
|
|| |||| ||| |||||| || || || ||| || |||| | ||| ||| |||| | |||| ||||||||||| ||||||||||||| | || ||| |
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| T |
23433262 |
tccaccccttcggaagaattaggcgggctgcttctagaaattagcacaggaggtgaattggaaatctccagtcgagtccgttttacttcagcatttatga |
23433361 |
T |
|
| Q |
302 |
ggggcgtgtccggggaattattggttggagcttcctgtggagagttcctta |
352 |
Q |
| |
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|||| ||| ||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
23433362 |
ggggtgtggccggggaattattggatggagcttcctgtggagagttactta |
23433412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 352
Target Start/End: Original strand, 23437933 - 23438058
Alignment:
| Q |
224 |
gctggttgtttccaggaatttgtacaagagctgaacttgaaacctccagtcgaggccgttttacttcaacggttttgaggggcgtgtccggggaattatt |
323 |
Q |
| |
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||||| || ||| ||||||||| ||| ||| |||||| |||||||| |||||||||||||||| ||| || ||| ||| ||| | ||||||||||| |
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| T |
23437933 |
gctggctgcttctaggaatttgcacaggaggtgaactggaaacctctagtcgaggccgtttta---caatatttatgacgggtgtggcaggggaattatt |
23438029 |
T |
|
| Q |
324 |
ggttggagcttcctgtggagagttcctta |
352 |
Q |
| |
|
|| ||||||||||||||||||||||||| |
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| T |
23438030 |
ggacggagcttcctgtggagagttcctta |
23438058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 23462776 - 23462830
Alignment:
| Q |
93 |
gaaatgcttattaataatgtctccaaaaggaaaattatcaccccagattgatgtg |
147 |
Q |
| |
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||||||||||| || || ||||||||| |||||||| ||| |||||||||||||| |
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| T |
23462776 |
gaaatgcttatcaacaaagtctccaaatggaaaattgtcatcccagattgatgtg |
23462830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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