View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3575_low_9 (Length: 366)
Name: NF3575_low_9
Description: NF3575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3575_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 3837614 - 3837968
Alignment:
| Q |
1 |
acaggtcaacttaaggggaattccgtttaactcaaccgataaaca--gcagtttcttaaccaaactaattagagaacataccttactatacaatacaaag |
98 |
Q |
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| T |
3837614 |
acaggtcaacttaaggggaattccgtttaactcaaccgataaacatagcagtttcttaaccaaactaattagagaacataccttacaatacaattcaaag |
3837713 |
T |
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| Q |
99 |
cttctgcggtaaattacattcaaagaatcctatataaaacaaaacacacgctgttacacaatttttacaagtcaacaaataaaacacttgccacacttca |
198 |
Q |
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| T |
3837714 |
cttctgcggtaaattacattcaaagaatcctatataaaacaaaacacacgctgttacacaatttttacaagtcaacaagtaaaacacttgccacacttca |
3837813 |
T |
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| Q |
199 |
atgacagattcattggtact-aaactgtaccagttcaaaagctcgttgatagcacgtagctgccttcttagcataataatccatttcgtcagggtaaccg |
297 |
Q |
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| T |
3837814 |
atgatagattcattggtactaaaactgtaccaattcaaaagctcgttgatagcacatagctgccttcttagcataataatccatttcgtcagggtcactg |
3837913 |
T |
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| Q |
298 |
ctagatgccaaggtacggcaagcatgtcccaggtaccaaagagcctcatgatgat |
352 |
Q |
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| T |
3837914 |
ctagatgccaagttacggcaagaatatcccaggtaccaaaaagcctcatgatgat |
3837968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 103 - 278
Target Start/End: Original strand, 3831536 - 3831719
Alignment:
| Q |
103 |
tgcggtaaattacattcaaagaatcctatataaaacaaaacacacgctgtta--cacaatttttacaagtcaacaaataaaacacttgccacacttcaat |
200 |
Q |
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| T |
3831536 |
tgcggtacatttcatttgaaggatcctatataaaacaggaaacactttgttaagcataatttttacaagtcaacaagtacaacactttccacacttcaat |
3831635 |
T |
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| Q |
201 |
gacagattcattggtact------aaactgtaccagttcaaaagctcgttgatagcacgtagctgccttcttagcataataatc |
278 |
Q |
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| T |
3831636 |
gatacattcattggtattgaacaaaaattgtaccaaatcaaaagcttgttgatagcatgcaattgccttctttgaataataatc |
3831719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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