View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_high_10 (Length: 467)
Name: NF3576_high_10
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 8 - 447
Target Start/End: Complemental strand, 10146604 - 10146165
Alignment:
| Q |
8 |
ccaagaatatctatttatatatttgtatctctatattttttccttacattacccacccaatagaagaaacagaaaaagaaaaagcaactagaaaatgacg |
107 |
Q |
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|||| ||||||||||| |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10146604 |
ccaataatatctatttgtatatttgcatctctatattttctccctacattacccacccaatagaagaaacagaaaaagaaaaagcaactagaaaatgacg |
10146505 |
T |
|
| Q |
108 |
gatgagactattccagtgattgatattgagaaaatttcagagcaattcgagtgcaaaaagttaagagatgcatgtgaaaaatggggttgttttaggatca |
207 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10146504 |
gatgagaccattccagtgattgatattgagaagatttcagagcaattcgagtgcaaaaagttaagagatgcatgtgaaaaatggggttgttttaggatca |
10146405 |
T |
|
| Q |
208 |
ttaaccactccattcctttgacacttatggctgaaatgagaatggttgttgaagctcttcatgaccttcctatggatatcaagaaaaacaacaaagatgt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10146404 |
ttaaccactccattcctttgacacttatggctgaaatgagaatggttgttgaagctcttcatgaccttcctatggatatcaagaaaaacaacaaagatgt |
10146305 |
T |
|
| Q |
308 |
catttctggaaggggttactttgcaccaagtgctttaaacccactattagaatctttcggcctctatgacatgggtgcttcacaagctatgcatgatttc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
10146304 |
catttctggaaggggttactttgcaccaagtgctttaaacccactattagaatctttcggcctctatgacatggatgcttcataagctatgcatgatttc |
10146205 |
T |
|
| Q |
408 |
tgctcgcaactgaatgtcacacctcaccagaggtatgcca |
447 |
Q |
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| T |
10146204 |
tgctctcaactgaatgtcacacctcaccagaggtatgcca |
10146165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 117 - 444
Target Start/End: Complemental strand, 10141483 - 10141156
Alignment:
| Q |
117 |
attccagtgattgatattgagaaaatttcagagcaattcgagtgcaaaaagttaagagatgcatgtgaaaaatggggttgttttaggatcattaaccact |
216 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||| |
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| T |
10141483 |
attccagtgattgatcttgagaaaatttcagagcaactcgagtgcaaaaagttaagagatgcatgtgaaagatggggttgtttcagaatcattaaccact |
10141384 |
T |
|
| Q |
217 |
ccattcctttgacacttatggctgaaatgagaatggttgttgaagctcttcatgaccttcctatggatatcaagaaaaacaacaaagatgtcatttctgg |
316 |
Q |
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| ||||||||| | ||||||||||| |||| |||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| |||| |
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| T |
10141383 |
ctattcctttgtcccttatggctgagatgaaaatggtcattgaagctcttcatgaccttcctatagatataaagaaaaacaacaaagatgccattcctgg |
10141284 |
T |
|
| Q |
317 |
aaggggttactttgcaccaagtgctttaaacccactattagaatctttcggcctctatgacatgggtgcttcacaagctatgcatgatttctgctcgcaa |
416 |
Q |
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||| |||||| |||||||||||||||| ||||| || ||| ||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| ||| |
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| T |
10141283 |
aagtggttaccttgcaccaagtgcttttaaccctctcttacaatctttcggcctctatgatatgggttcttcacaagccatgcatgatttctgctctcaa |
10141184 |
T |
|
| Q |
417 |
ctgaatgtcacacctcaccagaggtatg |
444 |
Q |
| |
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| T |
10141183 |
ctgaatgctacaccttaccagaggtatg |
10141156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 78 - 445
Target Start/End: Complemental strand, 10089887 - 10089519
Alignment:
| Q |
78 |
agaaaaagaaaaagcaactagaaaa-tgacggatgagactattccagtgattgatattgagaaaatttcagagcaattcgagtgcaaaaagttaagagat |
176 |
Q |
| |
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|||||||||||||||||| ||||| |||||| |||||| |||||| |||||| ||||||| ||||||||||||||||||||||| ||||||||| || |
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| T |
10089887 |
agaaaaagaaaaagcaacaggaaaaatgacgggtgagaccattccatacattgatcttgagaagatttcagagcaattcgagtgcaacaagttaagaaat |
10089788 |
T |
|
| Q |
177 |
gcatgtgaaaaatggggttgttttaggatcattaaccactccattcctttgacacttatggctgaaatgagaatggttgttgaagctcttcatgaccttc |
276 |
Q |
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||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||||| ||| |||| ||||||||||| ||||||||| ||||||| |
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| T |
10089787 |
gcatgtgaaaaatggggttgtttcaggatcattaaccattctattcctttgacccttatggatgagatgaaaatggttgttgtagctcttcacgaccttc |
10089688 |
T |
|
| Q |
277 |
ctatggatatcaagaaaaacaacaaagatgtcatttctggaaggggttactttgcaccaagtgctttaaacccactattagaatctttcggcctctatga |
376 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| ||||||| |||||||||| |||||||| ||| ||||| || |||||||| ||||||||||||| |
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| T |
10089687 |
ctatggatatcaagaaaaacaataaagatgtcattcctggaagtggttactttggaccaagtgtttttaaccctctcatagaatctgtcggcctctatga |
10089588 |
T |
|
| Q |
377 |
catgggtgcttcacaagctatgcatgatttctgctcgcaactgaatgtcacacctcaccagaggtatgc |
445 |
Q |
| |
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|||||| |||| |||||||| || ||||||||||| ||| |||||| |||||||| ||||||||||| |
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| T |
10089587 |
tatgggttcttcgcaagctatacaagatttctgctctcaattgaatgctacacctcatcagaggtatgc |
10089519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 80 - 445
Target Start/End: Original strand, 11300858 - 11301223
Alignment:
| Q |
80 |
aaaaagaaaaagcaactagaaaatgacggatgagactattccagtgattgatattgagaaaatttcagagcaattcgagtgcaaaaagttaagagatgca |
179 |
Q |
| |
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||||| |||||||||| |||||||||| |||||||||||| | |||||| ||||||| |||| |||||||||||||||||| ||||||||||||||| |
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| T |
11300858 |
aaaaataaaaagcaacagaaaaatgacgggtgagactattccgttcattgatcttgagaagattttagagcaattcgagtgcaagaagttaagagatgca |
11300957 |
T |
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| Q |
180 |
tgtgaaaaatggggttgttttaggatcattaaccactccattcctttgacacttatggctgaaatgagaatggttgttgaagctcttcatgaccttccta |
279 |
Q |
| |
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|||||||||||||||||||||||||| || ||||| || ||||||||||| ||||||| ||| |||| ||| |||||| |||||||||||||||||||| |
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| T |
11300958 |
tgtgaaaaatggggttgttttaggattatcaaccattctattcctttgacccttatggatgagatgaaaatagttgttatagctcttcatgaccttccta |
11301057 |
T |
|
| Q |
280 |
tggatatcaagaaaaacaacaaagatgtcatttctggaaggggttactttgcaccaagtgctttaaacccactattagaatctttcggcctctatgacat |
379 |
Q |
| |
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|||||| ||||||||||| |||||||||||| ||||||| |||||||||| ||||| || ||| ||||| | |||||||| | ||||||||||| || |
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| T |
11301058 |
tggataggaagaaaaacaataaagatgtcattcctggaagtggttactttggaccaactgtttttaaccctgtcatagaatctcttggcctctatgatat |
11301157 |
T |
|
| Q |
380 |
gggtgcttcacaagctatgcatgatttctgctcgcaactgaatgtcacacctcaccagaggtatgc |
445 |
Q |
| |
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|||| ||||||||||||| || |||||||||| ||| |||||| |||||||| ||||||||||| |
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|
| T |
11301158 |
gggttcttcacaagctatacaatatttctgctctcaattgaatgctacacctcatcagaggtatgc |
11301223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 111 - 433
Target Start/End: Complemental strand, 10153110 - 10152788
Alignment:
| Q |
111 |
gagactattccagtgattgatattgagaaaatttcagagcaattcgagtgcaaaaagttaagagatgcatgtgaaaaatggggttgttttaggatcatta |
210 |
Q |
| |
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||||||||||||||||||||| ||||||| ||||||||||||| ||| ||| |||| ||||||| |||||||||| |||||||||||| || ||||| | |
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| T |
10153110 |
gagactattccagtgattgatcttgagaagatttcagagcaatccgaatgccaaaaactaagagaagcatgtgaaagatggggttgtttcagaatcatca |
10153011 |
T |
|
| Q |
211 |
accactccattcctttgacacttatggctgaaatgagaatggttgttgaagctcttcatgaccttcctatggatatcaagaaaaacaacaaagatgtcat |
310 |
Q |
| |
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||||||| ||||||| || |||||| |||| |||| || |||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
10153010 |
accactctattccttccacccttatgtctgatatgaagatcgttgttcaagctcttcttgatcttcctatggatatcaagaaaaacaacaaagatgtcat |
10152911 |
T |
|
| Q |
311 |
ttctggaaggggttactttgcaccaagtgctttaaacccactattagaatctttcggcctctatgacatgggtgcttcacaagctatgcatgatttctgc |
410 |
Q |
| |
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| |||| || |||||| | |||||||||||| | || || || | ||| |||| ||||||||||| | ||| ||||||||||| ||||||| |||||| |
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| T |
10152910 |
tgctggtagtggttacatggcaccaagtgctgtcaatcctctctatgaagctttaggcctctatgatttaggttcttcacaagctgtgcatgaattctgc |
10152811 |
T |
|
| Q |
411 |
tcgcaactgaatgtcacacctca |
433 |
Q |
| |
|
|| ||| |||||| ||||||||| |
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|
| T |
10152810 |
tctcaattgaatgccacacctca |
10152788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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