View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_high_13 (Length: 405)
Name: NF3576_high_13
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 36974662 - 36975048
Alignment:
| Q |
1 |
caatcactataacacttagtattctttaaactatttagctatttcttttgatttatgagatattcgaagcctttataaagaactcaagaaaagagttgct |
100 |
Q |
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| T |
36974662 |
caatcactataacacttagtattctttaaactatttagctatttcttttgatttatgagatatttgaagcctttataaagaactcaagaaaagagttgct |
36974761 |
T |
|
| Q |
101 |
gcttgattattatttttaatgaacaaaagatgaggatatgaaagactcgtaaagtttcttgatagcttaaaatcaagttagtgaatttttatttagtgac |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36974762 |
gcttgattattatttttaatgcacaaaagatgaggatatgaaagactcgtaaagtttcttgatagcttaaaatcaagttagtgaatttttatttagtgac |
36974861 |
T |
|
| Q |
201 |
tcaatgtattcttctttgcataacctttctacttatagagataagcaatccttgctgatgtgattatattagttctgcaagggtgtgatagattaaagag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36974862 |
tcaatgtattcttctttgcataacctttctacttatagagataagcaatccttgctgatgtgattatattagttctgcaagggtgtggtagattaaagag |
36974961 |
T |
|
| Q |
301 |
tttgtcacttcatttgaagtctttgcaaatgttgcctaaattcttagaacgttcttcaagttgaacagctaagcacatgcatcctta |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36974962 |
tttgtcacttcatttgaagtctttgcaaatgttgcctaaattcttagaacgttcttcaagttgaacagctaagcacatgcatcctta |
36975048 |
T |
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