View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_high_14 (Length: 380)
Name: NF3576_high_14
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 107 - 379
Target Start/End: Complemental strand, 30164622 - 30164345
Alignment:
| Q |
107 |
ctagtttatgatagcaaatctaaaatattgttttcctaattgacataagacaagcacaaatgacagtttccaccaagttggcaattacacttaacttcac |
206 |
Q |
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| T |
30164622 |
ctagtttatgatagcaaatctaaaatattgttttcctaattgacataagacaagcacaaatgacagtttccaccaagttggcaattacacttaacttcac |
30164523 |
T |
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| Q |
207 |
caactagaaaatgtaagataaattgaagacttg----gagggatttgaaggggatttagtc-ttttggagatataattttaaagtgttaaaaatggtaat |
301 |
Q |
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| T |
30164522 |
caactagaaaatgtaagataaattgaagacttggatagagggatttgaaggggatttagtctttttggagatataattttaaagtgttaaaaatggtaat |
30164423 |
T |
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| Q |
302 |
ttgatgtactaaaatttccgcgtacacaaagtttagaaagaagttcgagcaattcatgctattatattagacataaac |
379 |
Q |
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| T |
30164422 |
gtagtgcactaaaatttccgcgtatacagagtgtaggaagaggttccaacaattcatgctattacgttagacataaac |
30164345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 30164721 - 30164665
Alignment:
| Q |
9 |
acgtaggatatgaagagataagactaagaacatactatattataatatgagtgatga |
65 |
Q |
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| T |
30164721 |
acgtaggatatgaagagataagactaagaacatactatattataatatgagtgatga |
30164665 |
T |
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