View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3576_high_16 (Length: 375)

Name: NF3576_high_16
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3576_high_16
NF3576_high_16
[»] chr3 (2 HSPs)
chr3 (23-167)||(9359593-9359737)
chr3 (171-221)||(9366493-9366543)
[»] chr7 (1 HSPs)
chr7 (35-221)||(43805104-43805292)
[»] chr2 (2 HSPs)
chr2 (171-221)||(18233060-18233110)
chr2 (171-222)||(41195517-41195568)
[»] chr8 (1 HSPs)
chr8 (121-220)||(24945194-24945295)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 23 - 167
Target Start/End: Original strand, 9359593 - 9359737
Alignment:
Q  23 gcccaaacaatagtcgtaaaattgcaatgtaagaaaagatggttagtcgattcttccactaacccacaaaaaacacacgtagaagacacttccggctata 122  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||    
T  9359593 gcccaaacaatagtcgtgaaattgcaatgtaagaaaagatggttagccgattcttccactaatccacaaaaaacacacctagaagacacttccggcgata 9359692  T
Q  123 aacaattacgccgtgcaagatttcttctagtagggattctatcta 167  Q
    |||||||| |||||||||||||||||||||||||||| |||||||    
T  9359693 aacaattatgccgtgcaagatttcttctagtagggatcctatcta 9359737  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 9366493 - 9366543
Alignment:
Q  171 agtttccaagagaaagctatcactttcaaaggggctttactattccaaata 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9366493 agtttccaagagaaagctatcactttcaaaggggctttactattccaaata 9366543  T

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Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 35 - 221
Target Start/End: Complemental strand, 43805292 - 43805104
Alignment:
Q  35 gtcgtaaaattgcaatgtaagaaaagatggttagtcgattcttccactaacccacaaaaaacacacgtagaagacacttccggctataaacaattacgcc 134  Q
    |||||||| ||||||||| ||||||||||||  | |||||||||| | | |||||| | ||||||| |||||||||||| || |  |||||||||||||     
T  43805292 gtcgtaaagttgcaatgtgagaaaagatggtaggccgattcttccgcaatcccacatataacacacctagaagacactttcgacggtaaacaattacgca 43805193  T
Q  135 gtgcaagatttcttctagtagggattctatct--aaggagtttccaagagaaagctatcactttcaaaggggctttactattccaaata 221  Q
      |||||||||||| |||||||||| | ||||  ||| ||||||||||||||||||| |||||||||||| |||||||| || ||||||    
T  43805192 tagcaagatttcttttagtagggatccgatctagaagaagtttccaagagaaagctaccactttcaaaggagctttacttttgcaaata 43805104  T

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Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 18233110 - 18233060
Alignment:
Q  171 agtttccaagagaaagctatcactttcaaaggggctttactattccaaata 221  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18233110 agtttccaagagaaagctatcactttcaaaggggctttacttttccaaata 18233060  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 41195517 - 41195568
Alignment:
Q  171 agtttccaagagaaagctatcactttcaaaggggctttactattccaaatat 222  Q
    ||||||||| ||||||| | ||||||||||||||||||||| ||||||||||    
T  41195517 agtttccaatagaaagcaaccactttcaaaggggctttacttttccaaatat 41195568  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 220
Target Start/End: Complemental strand, 24945295 - 24945194
Alignment:
Q  121 taaacaattacgccgtgcaagatttcttctagtagggattctatcta--aggagtttccaagagaaagctatcactttcaaaggggctttactattccaa 218  Q
    ||||||||| ||||  ||||||||| ||| || | |||| |||||||  || || ||||||||||| |||| |||||||||||| ||||| || ||||||    
T  24945295 taaacaatttcgcctagcaagatttgttcgagaaaggatcctatctagaagaagcttccaagagaacgctaccactttcaaaggagctttgcttttccaa 24945196  T
Q  219 at 220  Q
    ||    
T  24945195 at 24945194  T

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