View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_high_17 (Length: 372)
Name: NF3576_high_17
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 31 - 356
Target Start/End: Original strand, 3045836 - 3046161
Alignment:
| Q |
31 |
taagaaatacaattaattaagaagatccgtatccacttacactcattgagatattatttcatgtgggagtattgaaattcgtattcgatcgatttattaa |
130 |
Q |
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| T |
3045836 |
taagaaatacaattaattaagaagatccgtatccacttacactcattgagatattatttcatgtgggagtattgaaattcgtattcgatcgatttattaa |
3045935 |
T |
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| Q |
131 |
ttgtctgtactaataagtgaaacatcaataatgtaaccactcttgaagaaaatcaatttcatcttctaacgtttacttattttaggtcaagtaatcgtgt |
230 |
Q |
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| T |
3045936 |
ttgtctgtactaataagtgaaacatcaataatgtaaccactcttgaagaaaatcaatttcatcttctaacgtttacttattttaggtcaagtaattgtgt |
3046035 |
T |
|
| Q |
231 |
aatggttaaaaattcatattttaagttggggtgtgcacgatttgaaccctaactcttgtatatatttaacttcttaattagtgctttagatgcacttatt |
330 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||| |
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| T |
3046036 |
aatggttagaaattcatattttaaggtggggtgtgcacgattcgaaccctaactcttgtatatatttaacttcttaaccagtgccttaaatgcatttatt |
3046135 |
T |
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| Q |
331 |
agttaactctattatgtaatgttcat |
356 |
Q |
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|| ||||||||||||||||||||||| |
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| T |
3046136 |
agctaactctattatgtaatgttcat |
3046161 |
T |
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