View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3576_high_2 (Length: 672)

Name: NF3576_high_2
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3576_high_2
NF3576_high_2
[»] chr5 (5 HSPs)
chr5 (394-668)||(40638322-40638596)
chr5 (134-343)||(40638062-40638271)
chr5 (100-138)||(31888891-31888929)
chr5 (100-138)||(41384173-41384211)
chr5 (100-137)||(42561350-42561387)
[»] chr8 (3 HSPs)
chr8 (100-138)||(40529305-40529343)
chr8 (100-133)||(44502623-44502656)
chr8 (100-140)||(29321295-29321335)
[»] chr7 (1 HSPs)
chr7 (100-138)||(29177253-29177291)
[»] chr4 (6 HSPs)
chr4 (100-138)||(24754076-24754114)
chr4 (100-138)||(54623799-54623837)
chr4 (100-133)||(6753528-6753561)
chr4 (100-133)||(17610021-17610054)
chr4 (100-133)||(48030316-48030349)
chr4 (100-133)||(53629795-53629828)
[»] chr3 (4 HSPs)
chr3 (100-138)||(32963106-32963144)
chr3 (100-138)||(33868446-33868484)
chr3 (100-133)||(7051721-7051754)
chr3 (102-138)||(10044840-10044876)
[»] chr6 (2 HSPs)
chr6 (100-133)||(1780045-1780078)
chr6 (100-133)||(25197155-25197188)
[»] chr2 (5 HSPs)
chr2 (100-133)||(15228150-15228183)
chr2 (100-133)||(16805792-16805825)
chr2 (100-133)||(16845073-16845106)
chr2 (100-133)||(22897394-22897427)
chr2 (100-136)||(30466105-30466141)
[»] chr1 (2 HSPs)
chr1 (102-131)||(15302747-15302776)
chr1 (102-131)||(28888427-28888456)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 394 - 668
Target Start/End: Original strand, 40638322 - 40638596
Alignment:
Q  394 gtgggtggagaatatattctggagtgctctctttgcatactttgtttcactgaaccactagatcaaatctcttcttttcacacgcaaattgacgtgtacc 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40638322 gtgggtggagaatatattctggagtgctctctttgcatactttgtttcactaaaccactagatcaaatctcttcttttcacacgcaaattgacgtgtacc 40638421  T
Q  494 actcattgataaagttttggaattgctttaaatccaaaaacaagttcaattaagcaatcacatagtaatatacaagatgggtttcaaagctttacttgtg 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40638422 actcattgataaagttttggaattgctttaaatccaaaaacaagttcaattaagcaatcacatagtaatatacaagatgggtttcaaagctttacttgtg 40638521  T
Q  594 tgttcctttgtactatttttctatagctatggtttctcaatggctcaaatggttccagctgtttatattcttgga 668  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  40638522 tgttcctttgtactatttttctatagctatggtttctcaatggctcaaatggttccagctgtttatgtttttgga 40638596  T

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Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 134 - 343
Target Start/End: Original strand, 40638062 - 40638271
Alignment:
Q  134 atatacacttttgtgaatgctttcactttcaataaactaactaattaattgcatatggctgtcacgtggttatgagctacataaaaattaagatcataaa 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  40638062 atatacacttttgtgaatgctttcactttcaataaactaactaattaattgcatatggctgtcacgtgattatcagctacataaaaattaagatcataaa 40638161  T
Q  234 gcttacaaaatataaagaaatagactgtcctagttggatcattaaaattttgctccaaaacacaaattaatcttacttttgacaatgacaacatttgtat 333  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40638162 gcttacaaaatataaaaaaatagactgtcctagttggatcattaaaattttgctccaaaacacaaattaatcttacttttgacaatgacaacatttgtat 40638261  T
Q  334 agaccaacat 343  Q
    ||||||||||    
T  40638262 agaccaacat 40638271  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 31888929 - 31888891
Alignment:
Q  100 tctcaaaaggatcttataattagggatggagggaatata 138  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  31888929 tctcaaaaggatcttttaattagggatggagcgaatata 31888891  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 41384173 - 41384211
Alignment:
Q  100 tctcaaaaggatcttataattagggatggagggaatata 138  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  41384173 tctcaaaaggatcttataattagggacggagggagtata 41384211  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 42561350 - 42561387
Alignment:
Q  100 tctcaaaaggatcttataattagggatggagggaatat 137  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  42561350 tctcaaaaggatcttataattaaggacggagggaatat 42561387  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 40529343 - 40529305
Alignment:
Q  100 tctcaaaaggatcttataattagggatggagggaatata 138  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  40529343 tctcaaaaggatcttataattagggacggagggagtata 40529305  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 44502656 - 44502623
Alignment:
Q  100 tctcaaaaggatcttataattagggatggaggga 133  Q
    |||||||||||||||||||||||||| |||||||    
T  44502656 tctcaaaaggatcttataattagggacggaggga 44502623  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 29321295 - 29321335
Alignment:
Q  100 tctcaaaaggatcttataattagggatggagggaatataca 140  Q
    |||||||||| ||||||||||||||||||||| | ||||||    
T  29321295 tctcaaaagggtcttataattagggatggaggtagtataca 29321335  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 29177253 - 29177291
Alignment:
Q  100 tctcaaaaggatcttataattagggatggagggaatata 138  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  29177253 tctcaaaaggatcttataattagggacggagggagtata 29177291  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 24754114 - 24754076
Alignment:
Q  100 tctcaaaaggatcttataattagggatggagggaatata 138  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  24754114 tctcaaaaggatcttataattagggacggagggagtata 24754076  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 54623837 - 54623799
Alignment:
Q  100 tctcaaaaggatcttataattagggatggagggaatata 138  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  54623837 tctcaaaaggatcttataattagggacggaggtaatata 54623799  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 6753561 - 6753528
Alignment:
Q  100 tctcaaaaggatcttataattagggatggaggga 133  Q
    |||||||||||||||||||||||||| |||||||    
T  6753561 tctcaaaaggatcttataattagggacggaggga 6753528  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 17610021 - 17610054
Alignment:
Q  100 tctcaaaaggatcttataattagggatggaggga 133  Q
    |||||||||||||||||||||||||| |||||||    
T  17610021 tctcaaaaggatcttataattagggacggaggga 17610054  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 48030349 - 48030316
Alignment:
Q  100 tctcaaaaggatcttataattagggatggaggga 133  Q
    |||||||||| |||||||||||||||||||||||    
T  48030349 tctcaaaagggtcttataattagggatggaggga 48030316  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 53629828 - 53629795
Alignment:
Q  100 tctcaaaaggatcttataattagggatggaggga 133  Q
    |||||||||| |||||||||||||||||||||||    
T  53629828 tctcaaaagggtcttataattagggatggaggga 53629795  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 32963106 - 32963144
Alignment:
Q  100 tctcaaaaggatcttataattagggatggagggaatata 138  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  32963106 tctcaaaaggatcttataattagggacggagggagtata 32963144  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 33868484 - 33868446
Alignment:
Q  100 tctcaaaaggatcttataattagggatggagggaatata 138  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  33868484 tctcaaaaggatcttataattagggacggagggagtata 33868446  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 7051721 - 7051754
Alignment:
Q  100 tctcaaaaggatcttataattagggatggaggga 133  Q
    |||||||||||||||||||||||||| |||||||    
T  7051721 tctcaaaaggatcttataattagggacggaggga 7051754  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 10044876 - 10044840
Alignment:
Q  102 tcaaaaggatcttataattagggatggagggaatata 138  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  10044876 tcaaaaggatcttataattagggacggagggagtata 10044840  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 1780045 - 1780078
Alignment:
Q  100 tctcaaaaggatcttataattagggatggaggga 133  Q
    ||||||||||||||||||||||||||| ||||||    
T  1780045 tctcaaaaggatcttataattagggatagaggga 1780078  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 25197188 - 25197155
Alignment:
Q  100 tctcaaaaggatcttataattagggatggaggga 133  Q
    |||||||||||||||||||||||||| |||||||    
T  25197188 tctcaaaaggatcttataattagggacggaggga 25197155  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 15228150 - 15228183
Alignment:
Q  100 tctcaaaaggatcttataattagggatggaggga 133  Q
    |||||||||||||||||||||||||| |||||||    
T  15228150 tctcaaaaggatcttataattagggacggaggga 15228183  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 16805792 - 16805825
Alignment:
Q  100 tctcaaaaggatcttataattagggatggaggga 133  Q
    |||||||||||||||||||||||||| |||||||    
T  16805792 tctcaaaaggatcttataattagggacggaggga 16805825  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 16845073 - 16845106
Alignment:
Q  100 tctcaaaaggatcttataattagggatggaggga 133  Q
    |||||||||||||||||||||||||| |||||||    
T  16845073 tctcaaaaggatcttataattagggacggaggga 16845106  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 22897427 - 22897394
Alignment:
Q  100 tctcaaaaggatcttataattagggatggaggga 133  Q
    |||||||||||||||||||||||||| |||||||    
T  22897427 tctcaaaaggatcttataattagggacggaggga 22897394  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 30466141 - 30466105
Alignment:
Q  100 tctcaaaaggatcttataattagggatggagggaata 136  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  30466141 tctcaaaaggatcttataattagggacggaggtaata 30466105  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 131
Target Start/End: Original strand, 15302747 - 15302776
Alignment:
Q  102 tcaaaaggatcttataattagggatggagg 131  Q
    ||||||||||||||||||||||||||||||    
T  15302747 tcaaaaggatcttataattagggatggagg 15302776  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 131
Target Start/End: Original strand, 28888427 - 28888456
Alignment:
Q  102 tcaaaaggatcttataattagggatggagg 131  Q
    ||||||||||||||||||||||||||||||    
T  28888427 tcaaaaggatcttataattagggatggagg 28888456  T

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