View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_high_20 (Length: 363)
Name: NF3576_high_20
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 34364979 - 34364641
Alignment:
| Q |
16 |
tcacataaggcacacatgctacaaatccaacnnnnnnnnc--gaaattgaacaaacatctggaaaacattgatccattttggttcttcataattttacgg |
113 |
Q |
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| T |
34364979 |
tcacataaggcacacatgctacaaatccaacttttttttctcgaaattgaacaaacatctggaaaacatagatccattttgattcttcataattttacgg |
34364880 |
T |
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| Q |
114 |
ttgatcatttattaactcctatattatgtcgagtaaaatcgaactctaaatcaaatagttaaaagatttaagtatataccacttgtgtcatactatgttt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34364879 |
ttgatcatttattaactcctatattatgtcgagtaaaatcgaactctaaatcaaatagttaaaagatttaagtatctaccacttgtgtcatactatgttt |
34364780 |
T |
|
| Q |
214 |
gttat---agaataattgatgtaataacagaaagaaacctaaacaaatgtattataaattataacagttgaaaaaacggggtagataggggcgttattgt |
310 |
Q |
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||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34364779 |
gttatggaagaataattgatgtaataacggaaagaaacctagacaaatgtattataaattataacagttgaaaaaactgggtagataggggcgttattgt |
34364680 |
T |
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| Q |
311 |
atttttgagataatattattgttctatcgccacttttct |
349 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |
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| T |
34364679 |
atttttgagataatattattgttctatcgccatttttct |
34364641 |
T |
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