View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3576_high_24 (Length: 352)
Name: NF3576_high_24
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_high_24 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 15 - 352
Target Start/End: Complemental strand, 29225643 - 29225306
Alignment:
| Q |
15 |
tcactgaaaacaccatcattgggtggaaatgacttaccaatcaaagtcatgtctattgctgttgagaccttgatttggccttgtaaatttgctgatgaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29225643 |
tcactgaaaacaccatcattgggtggaaatgacttaccaatcaaagtcatgtctattgctgttgagaccttgatttggccttgtaaatttgcagatgaaa |
29225544 |
T |
|
| Q |
115 |
ttgcattttgaatgttttgcatggcagggagaatgtattgggcctcattgtcattaggtttaatttcatttccaacactgatgtacttgatttttacatt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29225543 |
ttgcattttgaatgttttgcatggcagggagaatgtattgggcctcattgtcattaggtttaatttcatttccaacactgatgtacttgatttttacatt |
29225444 |
T |
|
| Q |
215 |
ttgagcatagggtctcacatatttgttgacccaatttgtggcttcatttgcatttctaagagaaggaagagtttccttagctacatcaaggatcaattct |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
29225443 |
ttgagcatagggtctcacatatttgttgacccaatttgtggcttcatttgcatttctaagagaaggaagggtttccttagccacatcaaggatcaattct |
29225344 |
T |
|
| Q |
315 |
atgttggaacctctaagggcttggagggctggttcgtc |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29225343 |
atgttggaacctctaagggcttggagggctggttcgtc |
29225306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 29240815 - 29240482
Alignment:
| Q |
19 |
tgaaaacaccatcattgggtggaaatgacttaccaatcaaagtcatgtctattgctgttgagaccttgatttggccttgtaaatttgctgatgaaattgc |
118 |
Q |
| |
|
||||| ||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29240815 |
tgaaagcaccatcattgggtggatatgaagtaccaatcaaagtcatgtcaattgctgttgagaccttgatttggccttgtaaatttgctgatgaaattgc |
29240716 |
T |
|
| Q |
119 |
attttgaatgttttgcatggcagggagaatgtattgggcctcattgtcattaggtttaatttcatttccaacactgatgtacttgatttttacattttga |
218 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
29240715 |
attttgaatgttttgcatggcagtggcaatgtattgggcttcattgtcattaggtttaatttcatttccaacagtgatgtacttgatttttacatcttga |
29240616 |
T |
|
| Q |
219 |
gcatagggtctcacatatttgttgacccaatttgtggcttcatttgcatttctaagagaaggaagagtttccttagctacatcaaggatcaattctatgt |
318 |
Q |
| |
|
||||| ||| |||||||||| | |||||||||||| |||||||| ||| | ||||||||| || |||||||| || |||||||||||||||||||||| |
|
|
| T |
29240615 |
gcatatggtgtcacatatttttggacccaatttgtagcttcattgccatctgtaagagaagatagggtttccttggccacatcaaggatcaattctatgt |
29240516 |
T |
|
| Q |
319 |
tggaacctctaagggcttggagggctggttcgtc |
352 |
Q |
| |
|
|||||||| |||||||||| |||||| ||||||| |
|
|
| T |
29240515 |
tggaacctttaagggcttgaagggcttgttcgtc |
29240482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 29230303 - 29229973
Alignment:
| Q |
19 |
tgaaaacaccatcattgggtggaaatgacttaccaatcaaagtcatgtctattgctgttgagaccttgatttggccttgtaaatttgctgatgaaattgc |
118 |
Q |
| |
|
|||||||||||| |||||||||| |||| |||||||||||||||||||| |||||| |||||||||||||||| || |||||||| |||| |||||| || |
|
|
| T |
29230303 |
tgaaaacaccattattgggtggatatgaattaccaatcaaagtcatgtcaattgctattgagaccttgatttgtccctgtaaattggctgctgaaatagc |
29230204 |
T |
|
| Q |
119 |
attttgaatgttttgcatggcagggagaatgtattgggcctcattgtcattaggtttaatttcatttccaacactgatgtacttgatttttacattttga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| || ||| |||| | |||||||||||||||||| ||| |||||||||||||||| |||| | || |
|
|
| T |
29230203 |
attttgaatgttttgcatggcagggagaatggattgtgcttcactgtcgtaaggtttaatttcatttccgacagtgatgtacttgattttaacatctcga |
29230104 |
T |
|
| Q |
219 |
gcatagggtctcacatatttgttgacccaatttgtggcttcatttgcatttctaagagaaggaagagtttccttagctacatcaaggatcaattctatgt |
318 |
Q |
| |
|
||||||||| |||||||| | ||||||||||||||||||||||| ||||||||||||||| ||| |||||| |||| |||||||||||||| ||||||| |
|
|
| T |
29230103 |
gcatagggtttcacatatctattgacccaatttgtggcttcattggcatttctaagagaattaagggtttccctagccacatcaaggatcaactctatgt |
29230004 |
T |
|
| Q |
319 |
tggaacctctaagggcttggagggctggttc |
349 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
29230003 |
tggaacctctaagggcttggagggcttgttc |
29229973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 29251089 - 29250771
Alignment:
| Q |
19 |
tgaaaacaccatcattgggtggaaatgacttaccaatcaaagtcatgtctattgctgttgagaccttgatttggccttgtaaatttgctgatgaaattgc |
118 |
Q |
| |
|
||||||| ||| ||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29251089 |
tgaaaactccagcattgggtggatatgaattaccaatcaaagtcatgtcaattgctgttgagaccttgatttggccttgtaaatttgcagatgaaattgc |
29250990 |
T |
|
| Q |
119 |
attttgaatgttttgcatggcagggagaatgtattgggcctcattgtcattaggtttaatttcatttccaacactgatgtacttgatttttacattttga |
218 |
Q |
| |
|
|||||||||||| |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
29250989 |
attttgaatgttctgcatggcagtggcaatgtattgggcttcattgtcattaggtttaatttcatttccaacagtgatgtacttgatttttacatcttga |
29250890 |
T |
|
| Q |
219 |
gcatagggtctcacatatttgttgacccaatttgtggcttcatttgcatttctaagagaaggaagagtttccttagctacatcaaggatcaattctatgt |
318 |
Q |
| |
|
||||||||| ||||||| || | |||||||||||| |||||| |||| | ||||||| | ||| |||||||| | ||| ||||||||||||| |||| |
|
|
| T |
29250889 |
gcatagggtgtcacatacttttggacccaatttgtagcttcaccggcatctgtaagagaggaaagggtttccttggtcacaccaaggatcaattcaatgt |
29250790 |
T |
|
| Q |
319 |
tggaacctctaagggcttg |
337 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
29250789 |
tagaacctctaagggcttg |
29250771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 29218250 - 29218190
Alignment:
| Q |
87 |
atttggccttgtaaatttgctgatgaaattgcattttgaatgttttgcatggcagggagaa |
147 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
29218250 |
atttggccttgtaaatttgctgaagatattgctttttgaatgttttgcattgcaggaagaa |
29218190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University