View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3576_high_25 (Length: 333)

Name: NF3576_high_25
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3576_high_25
NF3576_high_25
[»] chr5 (21 HSPs)
chr5 (2-314)||(39780589-39780914)
chr5 (236-288)||(39791746-39791798)
chr5 (27-84)||(16280264-16280322)
chr5 (41-92)||(4153557-4153608)
chr5 (41-84)||(42885847-42885890)
chr5 (41-107)||(8241045-8241111)
chr5 (41-107)||(19480697-19480762)
chr5 (1-106)||(39919061-39919167)
chr5 (38-107)||(19891432-19891501)
chr5 (28-108)||(33999054-33999135)
chr5 (57-105)||(26912830-26912878)
chr5 (27-98)||(34398461-34398533)
chr5 (32-106)||(6558797-6558872)
chr5 (59-106)||(37034802-37034849)
chr5 (54-101)||(43328270-43328317)
chr5 (59-105)||(1269194-1269240)
chr5 (59-108)||(3712093-3712142)
chr5 (27-84)||(35241414-35241471)
chr5 (52-92)||(7968386-7968426)
chr5 (59-107)||(17064885-17064933)
chr5 (57-105)||(31074152-31074200)
[»] chr3 (17 HSPs)
chr3 (5-107)||(49728694-49728796)
chr3 (1-106)||(21405159-21405264)
chr3 (27-105)||(1743790-1743870)
chr3 (41-106)||(6488120-6488185)
chr3 (27-107)||(28193793-28193874)
chr3 (41-102)||(49194701-49194762)
chr3 (52-92)||(25638409-25638449)
chr3 (59-105)||(15492088-15492134)
chr3 (59-105)||(22472341-22472387)
chr3 (27-92)||(54626353-54626419)
chr3 (41-98)||(7938305-7938362)
chr3 (57-98)||(12894555-12894596)
chr3 (53-106)||(17218484-17218537)
chr3 (41-106)||(48739753-48739818)
chr3 (27-86)||(32732531-32732591)
chr3 (59-107)||(50727271-50727319)
chr3 (59-107)||(50785529-50785577)
[»] chr7 (14 HSPs)
chr7 (1-105)||(21388520-21388625)
chr7 (1-98)||(48288369-48288467)
chr7 (40-89)||(35293579-35293628)
chr7 (27-105)||(41913758-41913837)
chr7 (59-107)||(15655699-15655747)
chr7 (27-105)||(47999777-47999856)
chr7 (52-98)||(23817192-23817238)
chr7 (59-105)||(28444109-28444155)
chr7 (59-92)||(4232369-4232402)
chr7 (38-107)||(35815833-35815902)
chr7 (59-107)||(5073262-5073310)
chr7 (41-89)||(9497979-9498027)
chr7 (59-107)||(35645594-35645642)
chr7 (27-98)||(35683121-35683193)
[»] chr2 (14 HSPs)
chr2 (1-89)||(37063533-37063622)
chr2 (5-89)||(38179217-38179302)
chr2 (59-107)||(36005437-36005485)
chr2 (41-107)||(35798035-35798101)
chr2 (27-107)||(17034730-17034811)
chr2 (1-84)||(38387681-38387765)
chr2 (2-84)||(19612733-19612816)
chr2 (27-105)||(38525547-38525626)
chr2 (27-107)||(1232187-1232268)
chr2 (59-108)||(25076761-25076810)
chr2 (27-79)||(30871315-30871368)
chr2 (41-106)||(38557232-38557297)
chr2 (38-98)||(15764934-15764994)
chr2 (41-89)||(40688648-40688696)
[»] scaffold0031 (1 HSPs)
scaffold0031 (30-107)||(49998-50076)
[»] scaffold0025 (1 HSPs)
scaffold0025 (27-98)||(65781-65853)
[»] chr4 (15 HSPs)
chr4 (27-98)||(34040432-34040504)
chr4 (27-105)||(43481034-43481112)
chr4 (27-107)||(7686256-7686337)
chr4 (1-89)||(9661563-9661652)
chr4 (40-105)||(35465432-35465497)
chr4 (27-98)||(40994097-40994169)
chr4 (28-107)||(42073154-42073233)
chr4 (41-84)||(481554-481597)
chr4 (27-89)||(12775233-12775296)
chr4 (59-105)||(10402438-10402484)
chr4 (26-99)||(25526446-25526520)
chr4 (41-98)||(19594237-19594294)
chr4 (1-105)||(44602482-44602587)
chr4 (28-75)||(36802165-36802213)
chr4 (27-106)||(53376673-53376753)
[»] chr8 (13 HSPs)
chr8 (1-89)||(3189919-3190006)
chr8 (27-107)||(9070719-9070800)
chr8 (38-98)||(8698586-8698646)
chr8 (41-105)||(36540284-36540348)
chr8 (59-105)||(5326197-5326243)
chr8 (59-105)||(26280811-26280857)
chr8 (60-105)||(39587544-39587589)
chr8 (53-106)||(40322884-40322937)
chr8 (27-103)||(43856376-43856453)
chr8 (41-89)||(22487888-22487936)
chr8 (39-87)||(43287282-43287330)
chr8 (57-105)||(43403289-43403337)
chr8 (41-89)||(44088965-44089012)
[»] chr1 (13 HSPs)
chr1 (27-84)||(30360430-30360488)
chr1 (38-107)||(27344474-27344543)
chr1 (27-92)||(42127612-42127677)
chr1 (59-110)||(6893264-6893315)
chr1 (27-89)||(34656389-34656452)
chr1 (41-108)||(48638526-48638593)
chr1 (27-85)||(12374508-12374566)
chr1 (27-84)||(25540976-25541034)
chr1 (59-108)||(15775733-15775782)
chr1 (41-105)||(17776837-17776901)
chr1 (27-98)||(18534005-18534077)
chr1 (41-89)||(39922106-39922154)
chr1 (27-98)||(44019280-44019352)
[»] chr6 (12 HSPs)
chr6 (1-105)||(4408355-4408460)
chr6 (41-106)||(24758735-24758800)
chr6 (1-84)||(894600-894684)
chr6 (27-105)||(33697107-33697186)
chr6 (59-105)||(2816887-2816933)
chr6 (27-84)||(14709014-14709072)
chr6 (27-92)||(20728961-20729027)
chr6 (27-107)||(10483530-10483611)
chr6 (41-106)||(22574866-22574931)
chr6 (27-106)||(10517195-10517275)
chr6 (27-106)||(17454739-17454819)
chr6 (27-98)||(31935103-31935175)
[»] scaffold0154 (1 HSPs)
scaffold0154 (27-98)||(1720-1792)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 314
Target Start/End: Complemental strand, 39780914 - 39780589
Alignment:
Q  2 tggctagagctaacacaatttagttgtg--------gagtgtccggattcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttac 93  Q
    ||||||||||||||||||||||||||||        |||||||||| ||||||| |   ||||| |||||||||||||||||| ||| |||||||| |||    
T  39780914 tggctagagctaacacaatttagttgtgaagaagtggagtgtccgggttcgaactccggcccttgcatataaaatgcaatatccctagcaattgagctac 39780815  T
Q  94 gctcatggggataatcacacatttattaactcacaagtctcacttacatgctagannnnnnnnnn------gtcaggtatgctagattattttctaataa 187  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||    
T  39780814 gctcacggggataatcacacatttattaactcacaagtctcacttacatgctagattttttattttttttggtcaggtatgctagattattttctaataa 39780715  T
Q  188 ataaaataaaatgttcaaatatatgtaacgcgtttcttaaagacacaagcatactttacaaactggaagtaaatttcgtttaaaattgtatgattgcgga 287  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39780714 ataaaataaaatgttcaaatatatgtaacgcgtttcttaaa-acacaagcatactttacaaactggaagtaaatttcgtttaaaattgtatgattgggga 39780616  T
Q  288 caaaagtgctggaaggaaggaccacca 314  Q
    |||||||||||||||||||||||||||    
T  39780615 caaaagtgctggaaggaaggaccacca 39780589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 39791798 - 39791746
Alignment:
Q  236 gcatactttacaaactggaagtaaatttcgtttaaaattgtatgattgcggac 288  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  39791798 gcatacttttcaaactggaagtaaatttcatttaaaattgtatgattggggac 39791746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 16280322 - 16280264
Alignment:
Q  27 gtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaa 84  Q
    |||||||||||||  ||||||||| ||||| ||||||||||||||||||||||||||||    
T  16280322 gtggagtgtccggggttcgaaccccaacccctacatataaaatgcaatatctctaccaa 16280264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 4153608 - 4153557
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagtta 92  Q
    ||||||||| ||||| |||||||||||||||||||| ||||||| |||||||    
T  4153608 ttcgaaccccaacccatacatataaaatgcaatatccctaccaactgagtta 4153557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 42885890 - 42885847
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaa 84  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||    
T  42885890 ttcgaaccccaacccttacatataatatgcaatatctctaccaa 42885847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 8241111 - 8241045
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    |||||||||  |||||| ||||||| |||||||||| ||||||| |||| || ||||||||||||||    
T  8241111 ttcgaaccccgacccttgcatataatatgcaatatccctaccaactgagctaagctcatggggataa 8241045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 19480697 - 19480762
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    ||||||||| |||||| ||||||||||||| ||||  ||||||||||||||| ||||| ||||||||    
T  19480697 ttcgaaccccaaccct-acatataaaatgcgatattcctaccaattgagttaagctcacggggataa 19480762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 39919061 - 39919167
Alignment:
Q  1 gtggctagagctaacacaatttagttgtggagtgtcc-ggattcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcat 99  Q
    |||||||||||| |||||||||| ||||||||||||| || |||||||||   | | | ||||||| |||||||||| ||||||| | || || |||||     
T  39919061 gtggctagagctcacacaatttaattgtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaactaagctaagctcac 39919160  T
Q  100 ggggata 106  Q
    |||||||    
T  39919161 ggggata 39919167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 19891432 - 19891501
Alignment:
Q  38 ggattcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    |||||||||||| ||||| | ||||||||||||||||||  |||||| ||||||| ||||| | ||||||    
T  19891432 ggattcgaaccccaacccctgcatataaaatgcaatatccttaccaactgagttaagctcacgaggataa 19891501  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 33999135 - 33999054
Alignment:
Q  28 tggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggataat 108  Q
    ||||||||||||  ||||||||| ||||| ||||||||||||| ||||||  |||||| ||||||| ||| |||| ||||||    
T  33999135 tggagtgtccggggttcgaaccccaacccctacatataaaatgtaatatcgttaccaactgagttaagctaatggagataat 33999054  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 26912878 - 26912830
Alignment:
Q  57 tacatataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    ||||||||| |||||||||| ||||||||||||||| ||||| ||||||    
T  26912878 tacatataatatgcaatatccctaccaattgagttaagctcacggggat 26912830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 34398533 - 34398461
Alignment:
Q  27 gtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctca 98  Q
    |||||||||||||  |||||||||  || | | |||||||||||| ||||||||||||||||||||| |||||    
T  34398533 gtggagtgtccggggttcgaaccccgactcctgcatataaaatgcgatatctctaccaattgagttaagctca 34398461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 6558872 - 6558797
Alignment:
Q  32 gtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggata 106  Q
    ||||||||| |||||||||  |||| | ||||||| |||||||||| |||||||||||| || ||||| |||||||    
T  6558872 gtgtccggagttcgaaccccgacccctgcatataatatgcaatatccctaccaattgagctaagctcacggggata 6558797  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 37034849 - 37034802
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagttacgctcatggggata 106  Q
    |||||||||||| ||||| |||||||||||| || |||||||||||||    
T  37034849 catataaaatgcgatatccctaccaattgagctaagctcatggggata 37034802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 43328317 - 43328270
Alignment:
Q  54 ccttacatataaaatgcaatatctctaccaattgagttacgctcatgg 101  Q
    |||||||||||| || ||||||||||||||| ||||||| ||||||||    
T  43328317 ccttacatataatatacaatatctctaccaactgagttaagctcatgg 43328270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 1269194 - 1269240
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    ||||||| ||||||||||||||||||||||| || ||||| ||||||    
T  1269194 catataatatgcaatatctctaccaattgagctaagctcacggggat 1269240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 3712093 - 3712142
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagttacgctcatggggataat 108  Q
    |||||||||||||||||||||||||| |||| || ||| | |||||||||    
T  3712093 catataaaatgcaatatctctaccaactgagctaagcttacggggataat 3712142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 35241471 - 35241414
Alignment:
Q  27 gtggagtgtccggattcgaaccctaacccttacatataaaatgcaatatctctaccaa 84  Q
    |||||||||| || |||||||||  |||| | ||||||| ||||||||||||||||||    
T  35241471 gtggagtgtcagggttcgaaccccgacccctgcatataatatgcaatatctctaccaa 35241414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 7968386 - 7968426
Alignment:
Q  52 acccttacatataaaatgcaatatctctaccaattgagtta 92  Q
    |||| ||||||||  ||||||||||||||||||||||||||    
T  7968386 acccctacatatattatgcaatatctctaccaattgagtta 7968426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 17064885 - 17064933
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    ||||||| |||||||||| ||||||||||||||| ||||| | ||||||    
T  17064885 catataatatgcaatatccctaccaattgagttaagctcacgaggataa 17064933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 31074152 - 31074200
Alignment:
Q  57 tacatataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    ||||||||||||| |||||| ||||||| ||||||| ||||| ||||||    
T  31074152 tacatataaaatgtaatatccctaccaactgagttaagctcacggggat 31074200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 49728796 - 49728694
Alignment:
Q  5 ctagagctaacacaatttagttgtggagtgtccgg-attcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatgggg 103  Q
    |||||||| |||||||||| ||||||||||||||| |||||||||||  | ||| |||||||||||||||||| ||||||||||||||| ||||| ||||    
T  49728796 ctagagctcacacaatttaattgtggagtgtccgggattcgaaccctggctcttgcatataaaatgcaatatccctaccaattgagttaagctca-gggg 49728698  T
Q  104 ataa 107  Q
    ||||    
T  49728697 ataa 49728694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 21405264 - 21405159
Alignment:
Q  1 gtggctagagctaacacaatttagttgtggagtgtccggattcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatg 100  Q
    |||| ||||||| ||| |||||| |||||||||||| |||||||||||| | | | ||||||| |||||||||||| || |||| |||| || ||||| |    
T  21405264 gtggttagagctcacataatttaattgtggagtgtcgggattcgaaccccagctcctacatattaaatgcaatatcccttccaactgaggtaagctcacg 21405165  T
Q  101 gggata 106  Q
    ||||||    
T  21405164 gggata 21405159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 1743790 - 1743870
Alignment:
Q  27 gtggagtgtccgga--ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    |||||||||||||   |||||||||   ||| |||||||||||||||||||| ||||||||||||||| ||||| ||||||    
T  1743790 gtggagtgtccgggggttcgaaccccggcccctacatataaaatgcaatatccctaccaattgagttaagctcacggggat 1743870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 6488185 - 6488120
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggata 106  Q
    ||||||||||| ||| | ||||||| |||||||||| |||||||||||| || |||||||||||||    
T  6488185 ttcgaaccctagcccctgcatataatatgcaatatccctaccaattgagctaagctcatggggata 6488120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 28193874 - 28193793
Alignment:
Q  27 gtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    |||||||||||||  |||| ||||  |||| | |||||||||||||||||| ||||||| ||||||| ||||| ||||||||    
T  28193874 gtggagtgtccggggttcgtaccccgacccctgcatataaaatgcaatatccctaccaactgagttaagctcaaggggataa 28193793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 49194701 - 49194762
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggg 102  Q
    |||||||||| |||| ||||||||| |||||||||  ||||||||||||||| | |||||||    
T  49194701 ttcgaaccctgacccctacatataatatgcaatattcctaccaattgagttaagttcatggg 49194762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 25638409 - 25638449
Alignment:
Q  52 acccttacatataaaatgcaatatctctaccaattgagtta 92  Q
    |||| ||||||||| ||||||||||||||||||||||||||    
T  25638409 acccctacatataatatgcaatatctctaccaattgagtta 25638449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 15492134 - 15492088
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    |||||||||||||||||| ||||||| | ||||| ||||||||||||    
T  15492134 catataaaatgcaatatccctaccaactcagttaagctcatggggat 15492088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 22472341 - 22472387
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    ||||||| |||||||||||||||||| ||||||| ||||| ||||||    
T  22472341 catataatatgcaatatctctaccaactgagttaagctcacggggat 22472387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 54626419 - 54626353
Alignment:
Q  27 gtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagtta 92  Q
    |||||||||||||  |||||||||  || | |||||||||||||| ||||| |||||||||||||||    
T  54626419 gtggagtgtccggggttcgaaccccgactcctacatataaaatgcgatatccctaccaattgagtta 54626353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 7938305 - 7938362
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctca 98  Q
    |||||||||  |||| ||||||||||||| |||||| ||||||| ||||||| |||||    
T  7938305 ttcgaaccccgacccctacatataaaatgtaatatccctaccaactgagttaagctca 7938362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 12894555 - 12894596
Alignment:
Q  57 tacatataaaatgcaatatctctaccaattgagttacgctca 98  Q
    |||||||||||||||||||| ||||||| ||||||| |||||    
T  12894555 tacatataaaatgcaatatccctaccaactgagttaagctca 12894596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 17218537 - 17218484
Alignment:
Q  53 cccttacatataaaatgcaatatctctaccaattgagttacgctcatggggata 106  Q
    ||||| ||||||| |||||||||| ||||||| |||| || |||||||||||||    
T  17218537 cccttgcatataatatgcaatatccctaccaactgagctaagctcatggggata 17218484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 48739753 - 48739818
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggata 106  Q
    ||||||||| | ||| | |||||||||||||||||| ||||||| |||| || ||||| |||||||    
T  48739753 ttcgaaccccagcccctgcatataaaatgcaatatccctaccaactgagctaagctcacggggata 48739818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 32732531 - 32732591
Alignment:
Q  27 gtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaatt 86  Q
    |||||||||||||| |||||||||  |||| | |||||||||||| ||||| |||||||||    
T  32732531 gtggagtgtccggagttcgaaccccgacccctgcatataaaatgcgatatccctaccaatt 32732591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 50727271 - 50727319
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    |||||||||||| ||||| ||||||| ||||||| ||||| ||||||||    
T  50727271 catataaaatgcgatatccctaccaactgagttaggctcacggggataa 50727319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 50785577 - 50785529
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    |||||||||||| ||||| ||||||| ||||||| ||||| ||||||||    
T  50785577 catataaaatgcgatatccctaccaactgagttaggctcacggggataa 50785529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 21388625 - 21388520
Alignment:
Q  1 gtggctagagctaacacaatttagttgtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcat 99  Q
    |||||||||||| |||||||||| |||||||||||||||  |||||||||   | | | ||||||| |||||||||| ||||||| |||| |||||||||    
T  21388625 gtggctagagctcacacaatttaattgtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctaccaactgagctacgctcat 21388526  T
Q  100 ggggat 105  Q
    ||||||    
T  21388525 ggggat 21388520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 48288369 - 48288467
Alignment:
Q  1 gtggctagagctaacacaatttagttgtggagtgtcc-ggattcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctca 98  Q
    |||||||||||| |||||||||| ||||||||||||| |||||||||||    | | | ||||||| |||||||||| ||||||| ||||||| |||||    
T  48288369 gtggctagagctcacacaatttaattgtggagtgtccgggattcgaacctcggctcctgcatataatatgcaatatccctaccaactgagttaagctca 48288467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 35293579 - 35293628
Alignment:
Q  40 attcgaaccctaacccttacatataaaatgcaatatctctaccaattgag 89  Q
    ||||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  35293579 attcgaaccctgacccttgcatataaaatgcaatatctctaccatttgag 35293628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 41913758 - 41913837
Alignment:
Q  27 gtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    |||||||||||||  |||||||||| |||| | |||||||||||||||||||||| ||| |||| || |||| |||||||    
T  41913758 gtggagtgtccggggttcgaaccctgacccctgcatataaaatgcaatatctctatcaactgagctaagctcgtggggat 41913837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 15655747 - 15655699
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    |||||||||||||||||| |||||||||||| || |||||||| |||||    
T  15655747 catataaaatgcaatatccctaccaattgagctaagctcatggagataa 15655699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 47999856 - 47999777
Alignment:
Q  27 gtggagtgtccgg-attcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    ||||||||||||| |||||||||| | | | ||||||||| |||||||||| ||||||| |||| || ||||| ||||||    
T  47999856 gtggagtgtccgggattcgaaccccagctcctacatataatatgcaatatccctaccaactgagctaagctcacggggat 47999777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 23817238 - 23817192
Alignment:
Q  52 acccttacatataaaatgcaatatctctaccaattgagttacgctca 98  Q
    |||| ||||||||| |||||||||| ||||||||||||||| |||||    
T  23817238 acccctacatataacatgcaatatccctaccaattgagttaagctca 23817192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 28444109 - 28444155
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    |||||||||||| ||||||||||||| ||||||| ||||| ||||||    
T  28444109 catataaaatgcgatatctctaccaactgagttaagctcacggggat 28444155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 4232369 - 4232402
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagtta 92  Q
    ||||||| ||||||||||||||||||||||||||    
T  4232369 catataatatgcaatatctctaccaattgagtta 4232402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 35815902 - 35815833
Alignment:
Q  38 ggattcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    ||||||||||||  |||| | |||||||||||| ||||| ||||||| |||| || ||||| ||||||||    
T  35815902 ggattcgaaccccgacccctgcatataaaatgcgatatccctaccaactgagctaagctcacggggataa 35815833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 5073310 - 5073262
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    ||||||| || ||||||||||||||| ||||||| ||||| ||||||||    
T  5073310 catataatatacaatatctctaccaactgagttaagctcacggggataa 5073262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 9498027 - 9497979
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgag 89  Q
    |||||||||  |||| ||||||||| |||||||||| ||||||||||||    
T  9498027 ttcgaaccccgacccctacatataatatgcaatatccctaccaattgag 9497979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 35645642 - 35645594
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    ||||||| || ||||||| ||||||| |||| |||||||||||||||||    
T  35645642 catataatatacaatatccctaccaactgagctacgctcatggggataa 35645594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 35683121 - 35683193
Alignment:
Q  27 gtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctca 98  Q
    |||||||||||||| |||||||||  |||| | |||||||||||| ||||| ||||||| |||| || |||||    
T  35683121 gtggagtgtccggagttcgaaccccgacccctgcatataaaatgcgatatccctaccaactgagctaagctca 35683193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 37063622 - 37063533
Alignment:
Q  1 gtggctagagctaacacaatttagttgtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgag 89  Q
    |||||||||||| |||||||| | |||||||||||||||| ||||||||||  ||| | ||||||| |||||||||| ||||||| ||||    
T  37063622 gtggctagagctcacacaattaaattgtggagtgtccggagttcgaaccctggcccctgcatataatatgcaatatccctaccaactgag 37063533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 38179217 - 38179302
Alignment:
Q  5 ctagagctaacacaatttagttgtggagtgtccg-gattcgaaccctaacccttacatataaaatgcaatatctctaccaattgag 89  Q
    |||||||| |||||||||| |||||||||||||| | ||||||||| | ||| | |||||||||||||||||| ||||||| ||||    
T  38179217 ctagagctcacacaatttaattgtggagtgtccgaggttcgaaccccagcccctgcatataaaatgcaatatccctaccaactgag 38179302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 36005485 - 36005437
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    ||||||| |||||||||| ||||||||||||||||||||| ||||||||    
T  36005485 catataatatgcaatatccctaccaattgagttacgctcacggggataa 36005437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 35798035 - 35798101
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    ||||||||| ||||| | ||||||| |||||||||||||| ||| ||||||| ||||| ||||||||    
T  35798035 ttcgaaccccaacccctgcatataatatgcaatatctctaacaactgagttaagctcacggggataa 35798101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 17034811 - 17034730
Alignment:
Q  27 gtggagtgtccgg-attcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    ||||||||||||| ||||||||||  || | | ||||||| |||||||||| |||||||||||| || ||||| ||||||||    
T  17034811 gtggagtgtccgggattcgaaccccgactcctgcatataatatgcaatatccctaccaattgagctaagctcacggggataa 17034730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 38387765 - 38387681
Alignment:
Q  1 gtggctagagctaacacaatttagttgtggagtgtc-cggattcgaaccctaacccttacatataaaatgcaatatctctaccaa 84  Q
    |||||||||||| |||||||| | ||||||||||||  || ||||||||| | ||| | ||||||| |||||||||| |||||||    
T  38387765 gtggctagagctcacacaattaaattgtggagtgtctggggttcgaaccccagcccctgcatataatatgcaatatccctaccaa 38387681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 19612816 - 19612733
Alignment:
Q  2 tggctagagctaacacaatttagttgtggagtgtc-cggattcgaaccctaacccttacatataaaatgcaatatctctaccaa 84  Q
    ||||||||||| |||||||| | ||||||||||||  || ||||||||| | | | ||||||||| |||||||||| |||||||    
T  19612816 tggctagagctcacacaattaaattgtggagtgtctggggttcgaaccccagctcctacatataatatgcaatatccctaccaa 19612733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 38525547 - 38525626
Alignment:
Q  27 gtggagtgt-ccggattcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    ||||||||| |||| |||||||||| |||| | ||||||||||||||||||  |||||| |||| || ||||| ||||||    
T  38525547 gtggagtgttccgggttcgaaccctgacccctgcatataaaatgcaatatccttaccaactgagctaagctcacggggat 38525626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 1232268 - 1232187
Alignment:
Q  27 gtggagtgtccgg-attcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    ||||||||||||| |||||||||  ||||| | |||||||||||  |||||  |||||| ||||||| ||||| ||||||||    
T  1232268 gtggagtgtccgggattcgaacctcaacccctgcatataaaatgtgatatccttaccaactgagttaagctcacggggataa 1232187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 25076810 - 25076761
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagttacgctcatggggataat 108  Q
    ||||||||||||||||||| |||||| ||||||| ||||  |||||||||    
T  25076810 catataaaatgcaatatctttaccaactgagttaagctcgcggggataat 25076761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 30871315 - 30871368
Alignment:
Q  27 gtggagtgtccgg-attcgaaccctaacccttacatataaaatgcaatatctct 79  Q
    ||||||||||||| ||||||||||| |||| | ||| |||||||||||||||||    
T  30871315 gtggagtgtccgggattcgaaccctgacccctgcatgtaaaatgcaatatctct 30871368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 38557232 - 38557297
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggata 106  Q
    |||||||||  |||| | |||||||||||| ||||| ||||||| ||||||| ||||| |||||||    
T  38557232 ttcgaaccccgacccctgcatataaaatgccatatccctaccaactgagttaagctcacggggata 38557297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 15764994 - 15764934
Alignment:
Q  38 ggattcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctca 98  Q
    |||||||||||| ||||| | ||||||| |||||||||| ||||||| |||| || |||||    
T  15764994 ggattcgaaccccaacccctgcatataatatgcaatatccctaccaactgagctaagctca 15764934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 40688648 - 40688696
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgag 89  Q
    ||||||||||  ||| | |||||||||||||||||||||||||| ||||    
T  40688648 ttcgaaccctggcccctgcatataaaatgcaatatctctaccaactgag 40688696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 49998 - 50076
Alignment:
Q  30 gagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    ||||||||||| ||||||||||||||| ||||||||| |||||||||| ||| ||| ||||||| ||||| ||| ||||    
T  49998 gagtgtccggagttcgaaccctaacccctacatataatatgcaatatccctatcaactgagttaagctcacgggaataa 50076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 65781 - 65853
Alignment:
Q  27 gtggagtgtccgg-attcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctca 98  Q
    ||||||||||||| |||||||||| ||||| ||||||||| |||||||||| ||||||| |||| || |||||    
T  65781 gtggagtgtccgggattcgaaccccaacccctacatataatatgcaatatccctaccaactgagctaagctca 65853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 34040504 - 34040432
Alignment:
Q  27 gtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctca 98  Q
    |||||||||||||| |||||||||| |||| ||||||||||||||||||| |||| ||| |||| || |||||    
T  34040504 gtggagtgtccggagttcgaaccctgacccctacatataaaatgcaatatttctatcaactgagctaagctca 34040432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 43481034 - 43481112
Alignment:
Q  27 gtggagtgtccggattcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    ||||||||||||| |||||||||   ||| | |||||||| ||||||||| ||||||| ||||||| ||||| ||||||    
T  43481034 gtggagtgtccgggttcgaaccccggcccctgcatataaagtgcaatatccctaccaactgagttaagctcacggggat 43481112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 7686256 - 7686337
Alignment:
Q  27 gtggagtgtcc-ggattcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    ||||||||||| || |||||||||   ||| | |||||||||||||||||||||||||| |||| || ||||| ||||||||    
T  7686256 gtggagtgtccagggttcgaaccccggcccctgcatataaaatgcaatatctctaccaactgagctaagctcacggggataa 7686337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 9661652 - 9661563
Alignment:
Q  1 gtggctagagctaacacaatttagttgtggagtgtcc-ggattcgaaccctaacccttacatataaaatgcaatatctctaccaattgag 89  Q
    |||||||||||| | |||||||| ||||||||||||| || ||||||| |  || ||||||||||| ||||||||||  |||||| ||||    
T  9661652 gtggctagagctcatacaatttaattgtggagtgtccggggttcgaactccgactcttacatataatatgcaatatccataccaactgag 9661563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 35465497 - 35465432
Alignment:
Q  40 attcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    |||||||||||||||| |  ||||||||||||||||| ||||||| |||| || ||||| ||||||    
T  35465497 attcgaaccctaacccctgtatataaaatgcaatatccctaccaactgagctaagctcacggggat 35465432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 40994097 - 40994169
Alignment:
Q  27 gtggagtgtccgg-attcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctca 98  Q
    ||||||||||||| |||||||||| ||| | ||||||||| |||||||||| ||||||| |||| || |||||    
T  40994097 gtggagtgtccgggattcgaaccccaactcctacatataatatgcaatatccctaccaactgagctaagctca 40994169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 42073233 - 42073154
Alignment:
Q  28 tggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    ||||||||||||  |||||||||  ||||| ||||||||||||||||||||||||||| |||| || | ||| ||||||||    
T  42073233 tggagtgtccggggttcgaacccggaccct-acatataaaatgcaatatctctaccaagtgagctaagttcacggggataa 42073154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 481554 - 481597
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaa 84  Q
    ||||||||| ||||| ||||||||| ||||||||||||||||||    
T  481554 ttcgaaccccaacccctacatataatatgcaatatctctaccaa 481597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 12775233 - 12775296
Alignment:
Q  27 gtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgag 89  Q
    ||||||||||| || |||||||||| |||| | |||||||||||||||||| ||||||| ||||    
T  12775233 gtggagtgtccagaattcgaaccctgacccctgcatataaaatgcaatatccctaccaactgag 12775296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 10402484 - 10402438
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    ||||||| |||||||||||||||||| ||||||| ||||| ||||||    
T  10402484 catataatatgcaatatctctaccaactgagttaagctcacggggat 10402438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 25526520 - 25526446
Alignment:
Q  26 tgtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcat 99  Q
    ||||||||||||||  |||||| || ||| ||||||||||| || ||||||| ||||||| ||||||| ||||||    
T  25526520 tgtggagtgtccgggcttcgaatcccaacgcttacatataatatacaatatccctaccaactgagttaagctcat 25526446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 19594294 - 19594237
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctca 98  Q
    ||||||||||  ||| ||||||||| |||||||||||||| ||| ||||||| |||||    
T  19594294 ttcgaaccctggcccctacatataatatgcaatatctctatcaactgagttaagctca 19594237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 44602587 - 44602482
Alignment:
Q  1 gtggctagagctaacacaatttagttgtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcat 99  Q
    |||| ||||||| |||||||| | |||||||||| | ||  |||||||||   ||| | |||||||||||||||||| ||||||| |||| || |||||     
T  44602587 gtgggtagagctcacacaattaaattgtggagtggctggggttcgaaccccggcccctgcatataaaatgcaatatccctaccaactgagctaagctcac 44602488  T
Q  100 ggggat 105  Q
    ||||||    
T  44602487 ggggat 44602482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 36802213 - 36802165
Alignment:
Q  28 tggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatat 75  Q
    ||||||||||||| ||||||| | ||||| |||||||||||||||||||    
T  36802213 tggagtgtccggagttcgaactccaacccctacatataaaatgcaatat 36802165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 53376673 - 53376753
Alignment:
Q  27 gtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggata 106  Q
    |||||||||||||  |||||||||   ||||| ||||||| |||||||||| |||||||||||| || ||||  |||||||    
T  53376673 gtggagtgtccggggttcgaaccccggcccttgcatataacatgcaatatccctaccaattgagctaagctcgcggggata 53376753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 3189919 - 3190006
Alignment:
Q  1 gtggctagagctaacacaatttagttgtggagtgtcc-ggattcgaaccctaacccttacatataaaatgcaatatctctaccaattgag 89  Q
    |||||||||||| |||||||||| ||||||||||||| || |||||||||  |||  | ||||||| |||||||||| ||||||| ||||    
T  3189919 gtggctagagctcacacaatttaattgtggagtgtccggggttcgaaccccgacc--tgcatataatatgcaatatccctaccaactgag 3190006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 9070719 - 9070800
Alignment:
Q  27 gtggagtgtccg-gattcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    |||||||||||| | |||||||||| |||| |||||||||||||| ||||| |||| || ||||||| ||||| | ||||||    
T  9070719 gtggagtgtccgaggttcgaaccctgacccctacatataaaatgcgatatccctactaactgagttaagctcacgaggataa 9070800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 8698586 - 8698646
Alignment:
Q  38 ggattcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctca 98  Q
    |||||||||||| ||||| ||||||||| |||||||||| ||||||| |||| || |||||    
T  8698586 ggattcgaaccccaacccctacatataatatgcaatatccctaccaactgagctaagctca 8698646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 36540348 - 36540284
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    |||||||||  |||| | |||||||||||||||||| ||||||| ||||||| ||||| ||||||    
T  36540348 ttcgaaccccgacccctgcatataaaatgcaatatccctaccaactgagttaagctcacggggat 36540284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 5326197 - 5326243
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    |||||||||||||||||||||||||| |||| || ||||| ||||||    
T  5326197 catataaaatgcaatatctctaccaactgagctaagctcacggggat 5326243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 26280811 - 26280857
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    |||||||||||||||||| ||||||| ||||||| ||||| ||||||    
T  26280811 catataaaatgcaatatccctaccaactgagttaagctcacggggat 26280857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 39587589 - 39587544
Alignment:
Q  60 atataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    ||||||||||||||||||||||||| |||| || ||||| ||||||    
T  39587589 atataaaatgcaatatctctaccaactgagctaagctcacggggat 39587544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 40322884 - 40322937
Alignment:
Q  53 cccttacatataaaatgcaatatctctaccaattgagttacgctcatggggata 106  Q
    ||||||||||||||||||||||| |||||||| ||||  | ||||| |||||||    
T  40322884 cccttacatataaaatgcaatatttctaccaactgagccaagctcacggggata 40322937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 43856376 - 43856453
Alignment:
Q  27 gtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatgggg 103  Q
    |||||||||||||  |||||||||   ||| | |||||||||||||||||| ||||||| ||||||| ||||| ||||    
T  43856376 gtggagtgtccggggttcgaaccccggcccctgcatataaaatgcaatatccctaccaactgagttaagctcacgggg 43856453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 22487936 - 22487888
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgag 89  Q
    |||| |||| ||||||| |||||||||||||||||| ||||||| ||||    
T  22487936 ttcgtaccccaacccttgcatataaaatgcaatatccctaccaactgag 22487888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 43287282 - 43287330
Alignment:
Q  39 gattcgaaccctaacccttacatataaaatgcaatatctctaccaattg 87  Q
    ||||| ||||| | ||| |||||||||||| ||||||||||||||||||    
T  43287282 gattcaaaccccagcccatacatataaaatacaatatctctaccaattg 43287330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 43403337 - 43403289
Alignment:
Q  57 tacatataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    ||||||||| |||||||||||||||||| ||| ||| |||||| |||||    
T  43403337 tacatataatatgcaatatctctaccaactgaattaagctcatagggat 43403289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 44088965 - 44089012
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgag 89  Q
    |||||||||| ||||| |||||||| |||||||||||||||||| ||||    
T  44088965 ttcgaacccttaccct-acatataacatgcaatatctctaccaactgag 44089012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 30360488 - 30360430
Alignment:
Q  27 gtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaa 84  Q
    |||||||||||||  |||||||||  |||| ||||||||||||||||||||||||||||    
T  30360488 gtggagtgtccggggttcgaaccccgacccctacatataaaatgcaatatctctaccaa 30360430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 27344543 - 27344474
Alignment:
Q  38 ggattcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    |||||||||||||| ||| ||||||||| ||||||||| |||||||| |||| || ||||| | ||||||    
T  27344543 ggattcgaaccctagcccctacatataatatgcaatatgtctaccaactgagctaagctcacgaggataa 27344474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 42127612 - 42127677
Alignment:
Q  27 gtggagtgtccggattcgaaccctaacccttacatataaaatgcaatatctctaccaattgagtta 92  Q
    ||||||||||||| ||| |||||| ||||||  |||||| ||||||||||  ||||||||||||||    
T  42127612 gtggagtgtccgggttcaaaccctgacccttgtatataatatgcaatatccataccaattgagtta 42127677  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 6893264 - 6893315
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagttacgctcatggggataatca 110  Q
    |||||||||||||||||| ||||||| |||| || ||||| |||||||||||    
T  6893264 catataaaatgcaatatccctaccaactgagctaagctcacggggataatca 6893315  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 34656389 - 34656452
Alignment:
Q  27 gtggagtgtccg-gattcgaaccctaacccttacatataaaatgcaatatctctaccaattgag 89  Q
    |||||||||||| | ||||||||| ||||| | |||||||||||||||||||||| ||| ||||    
T  34656389 gtggagtgtccgaggttcgaaccccaacccctgcatataaaatgcaatatctctatcaactgag 34656452  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 48638593 - 48638526
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggataat 108  Q
    ||||||||| | ||| | |||||||||||||||||| ||||||| |||| || ||||| |||||||||    
T  48638593 ttcgaaccccagcccctgcatataaaatgcaatatccctaccaactgagctaagctcacggggataat 48638526  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 12374508 - 12374566
Alignment:
Q  27 gtggagtgtccggattcgaaccctaacccttacatataaaatgcaatatctctaccaat 85  Q
    |||| |||||||| |||||||||  |||||| ||||||| ||||||||||||| |||||    
T  12374508 gtggggtgtccgggttcgaaccccgacccttgcatataatatgcaatatctctgccaat 12374566  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 25541034 - 25540976
Alignment:
Q  27 gtggagtgtccg-gattcgaaccctaacccttacatataaaatgcaatatctctaccaa 84  Q
    |||||||||||| |||||||||||  |||| ||||||||||| |||||||| |||||||    
T  25541034 gtggagtgtccgagattcgaaccccgacccctacatataaaacgcaatatccctaccaa 25540976  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 15775782 - 15775733
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagttacgctcatggggataat 108  Q
    ||||||| |||||||||| ||||||||||||||| ||||| ||| |||||    
T  15775782 catataatatgcaatatccctaccaattgagttaagctcacgggaataat 15775733  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 17776901 - 17776837
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    |||||||||| |||| | |||||||||||||||||  ||||||| |||| ||  |||||||||||    
T  17776901 ttcgaaccctgacccctgcatataaaatgcaatatgcctaccaactgagctaaactcatggggat 17776837  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 18534077 - 18534005
Alignment:
Q  27 gtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctca 98  Q
    |||||||||||||  |||||||||  || | ||||||||| |||||||||||||||||| |||| || |||||    
T  18534077 gtggagtgtccggggttcgaaccccgactcctacatataatatgcaatatctctaccaactgagctaagctca 18534005  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 39922106 - 39922154
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgag 89  Q
    ||||||||||||||| | ||||||| ||| |||||||||| ||||||||    
T  39922106 ttcgaaccctaacccctgcatataatatgtaatatctctaacaattgag 39922154  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 44019352 - 44019280
Alignment:
Q  27 gtggagtgtccgg-attcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctca 98  Q
    ||||||||||||| ||||||| ||  |||||| |||||||||||||||||| ||| ||| |||| || |||||    
T  44019352 gtggagtgtccgggattcgaatcccgacccttgcatataaaatgcaatatccctatcaactgagctaagctca 44019280  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 4408460 - 4408355
Alignment:
Q  1 gtggctagagctaacacaatttagttgtggagtgtccg-gattcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcat 99  Q
    ||||| |||||| |||||||| | |||||||||||| | | ||||||||| | ||| | ||||||| |||||||||| ||||||| |||| || |||||     
T  4408460 gtggccagagctcacacaattaaattgtggagtgtctgtggttcgaaccccagcccctgcatataatatgcaatatccctaccaactgagctaagctcac 4408361  T
Q  100 ggggat 105  Q
    ||||||    
T  4408360 ggggat 4408355  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 24758800 - 24758735
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggata 106  Q
    |||||||||  |||| | |||||||||||| ||||| ||||||||||||||| ||||| |||||||    
T  24758800 ttcgaaccccgacccctgcatataaaatgcgatatccctaccaattgagttaagctcacggggata 24758735  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 894600 - 894684
Alignment:
Q  1 gtggctagagctaacacaatttagttgtggagtgtcc-ggattcgaaccctaacccttacatataaaatgcaatatctctaccaa 84  Q
    |||||||||||| |||||||| | ||||||||||||| || ||||||||   |||| | ||||||| |||||||||| |||||||    
T  894600 gtggctagagctcacacaattaaattgtggagtgtccggggttcgaacctcgacccctgcatataatatgcaatatccctaccaa 894684  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 33697107 - 33697186
Alignment:
Q  27 gtggagtgtccgg-attcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    ||||||||||||| |||||||| |  |||| | |||||||||||||||||| ||| ||| ||||||| ||||| ||||||    
T  33697107 gtggagtgtccgggattcgaactccgacccctgcatataaaatgcaatatccctatcaactgagttaagctcacggggat 33697186  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 2816933 - 2816887
Alignment:
Q  59 catataaaatgcaatatctctaccaattgagttacgctcatggggat 105  Q
    ||||||| |||||||||| |||||||||||| || ||||||||||||    
T  2816933 catataacatgcaatatccctaccaattgagctaagctcatggggat 2816887  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 14709014 - 14709072
Alignment:
Q  27 gtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaa 84  Q
    |||||||||||||| |||||||||   ||| ||||||||| ||||||||||||||||||    
T  14709014 gtggagtgtccggagttcgaaccccggcccctacatataatatgcaatatctctaccaa 14709072  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 20729027 - 20728961
Alignment:
Q  27 gtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagtta 92  Q
    ||||||||||| || |||||||||   ||||||||||||| ||||||||||||||| || |||||||    
T  20729027 gtggagtgtccagaattcgaaccccggcccttacatataatatgcaatatctctactaactgagtta 20728961  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 10483530 - 10483611
Alignment:
Q  27 gtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggataa 107  Q
    |||||||||||||  |||||||||  |||| | |||||||||||||||||| ||||||| |||| || | ||| ||||||||    
T  10483530 gtggagtgtccggggttcgaaccccgacccctgcatataaaatgcaatatccctaccaactgagctaagatcacggggataa 10483611  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 22574931 - 22574866
Alignment:
Q  41 ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggata 106  Q
    ||||||||| ||||| | |||||||||||| ||||| ||||||| |||| || ||||| |||||||    
T  22574931 ttcgaaccccaacccctgcatataaaatgcgatatccctaccaactgagctaagctcacggggata 22574866  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 10517275 - 10517195
Alignment:
Q  27 gtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggata 106  Q
    |||||||||||||  |||||||||  |||| | ||||||||||||||||||  |||||| |||| || ||||| |||||||    
T  10517275 gtggagtgtccggggttcgaaccccgacccctgcatataaaatgcaatatccataccaactgagctaagctcacggggata 10517195  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 17454739 - 17454819
Alignment:
Q  27 gtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctcatggggata 106  Q
    |||||||||||||  |||||||||  || | | ||||||| |||||||||||||||||| |||| || ||||| |||||||    
T  17454739 gtggagtgtccggggttcgaaccccgactcctgcatataatatgcaatatctctaccaactgagataagctcacggggata 17454819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 31935175 - 31935103
Alignment:
Q  27 gtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctca 98  Q
    |||||||||||||  |||||||||  |||| | |||||||||||||||||| ||||||| |||| || |||||    
T  31935175 gtggagtgtccggggttcgaaccccgacccctgcatataaaatgcaatatccctaccaactgagctaagctca 31935103  T

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Target: scaffold0154 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 1720 - 1792
Alignment:
Q  27 gtggagtgtccgga-ttcgaaccctaacccttacatataaaatgcaatatctctaccaattgagttacgctca 98  Q
    |||||||||||||  ||||||||| ||||||||||||||| ||| |||||| |||| |  ||||||| |||||    
T  1720 gtggagtgtccggggttcgaaccccaacccttacatataatatgtaatatccctactagctgagttaagctca 1792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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