View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_high_26 (Length: 320)
Name: NF3576_high_26
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 53425205 - 53425499
Alignment:
| Q |
18 |
aatatggaccaattgagagtgaaagtacatcaactccatcataaatggcatcgtcgaatgcagcaagcatgccagagccagaacagccaggagagcacac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53425205 |
aatatggaccaattgagagtgaaagtacatcaactccatcataaatggcatcgtcgaatgcagcaagcatgccagagccagaacagccaggagagcacac |
53425304 |
T |
|
| Q |
118 |
tttgtaaattgccaacctcgattcaggagacccaccttttgctgtccctgccgcgagatcataatatgatgcaccactcacaaagttccctgcagccgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53425305 |
tttgtaaattgccaacctcgattcaggagacccaccttttgctgtccctgccgcgagatcataatatgatgcaccactcacaaagttccctgcagccgtt |
53425404 |
T |
|
| Q |
218 |
gaagctgtgtgggtcccatgtccatttctatcccttaccgtgttctccgtt---tcatcgtactcatcaggatcagcgtaatatcttgctcctat |
309 |
Q |
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| T |
53425405 |
gaagctgtgtgggtcccatgtccatttctatcccttaccgtgttctccgtttcatcatcgtactcatcaggatcagcgtaataccttgctcctat |
53425499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 44 - 261
Target Start/End: Original strand, 53309221 - 53309438
Alignment:
| Q |
44 |
acatcaactccatcataaatggcatcgtcgaatgcagcaagcatgccagagccagaacagccaggagagcacactttgtaaattgccaacctcgattcag |
143 |
Q |
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| T |
53309221 |
acatctactccatcgaaaatggcattgtcgaacgctgcaaggatcccagagccataacaggaaggaaatcacactttgtaaatcgctaacctcgactcag |
53309320 |
T |
|
| Q |
144 |
gagacccaccttttgctgtccctgccgcgagatcataatatgatgcaccactcacaaagttccctgcagccgttgaagctgtgtgggtcccatgtccatt |
243 |
Q |
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| T |
53309321 |
aggacccaccttttgctgtcccttctgcaagaccatagtatgatgcaccactcacgacattccctgctgctgtcgatgctgtatgggtaccatgtccata |
53309420 |
T |
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| Q |
244 |
tctatcccttaccgtgtt |
261 |
Q |
| |
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| |||||||||||||||| |
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| T |
53309421 |
tgtatcccttaccgtgtt |
53309438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 53432360 - 53432570
Alignment:
| Q |
32 |
gagagtgaaagtacatcaactccatcataaatggcatcgtcgaatgcagcaagcatgccagagccagaacagccaggagagcacactttgtaaattgcca |
131 |
Q |
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||||||||||| ||||||||||||||| |||| ||||| |||||||| ||||| ||| | ||||| || || | |||||||||||||||||||| |
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| T |
53432360 |
gagagtgaaagcacatcaactccatcagaaattgcatcatcgaatgccgcaaggatggccgagcctgagcaaaacatattgcacactttgtaaattgcca |
53432459 |
T |
|
| Q |
132 |
acctcgattcaggagacccaccttttgctgtccctgccgcgagatcataatatgatgcaccactcacaaagttccctgcagccgttgaagctgtgtgggt |
231 |
Q |
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||||||||||||| ||||| ||||||| ||||||||||| ||| || | ||||||||||||||||||| ||||| || || || || ||||||||||| |
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| T |
53432460 |
acctcgattcaggggacccgccttttgtcgtccctgccgcaagaccaaagtatgatgcaccactcacaacattcccagccgcggtcgatgctgtgtgggt |
53432559 |
T |
|
| Q |
232 |
cccatgtccat |
242 |
Q |
| |
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||||| |||| |
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| T |
53432560 |
tccatgaccat |
53432570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 48372324 - 48372155
Alignment:
| Q |
32 |
gagagtgaaagtacatcaactccatcataaatggcatcgtcgaatgcagcaagcatgccagagccagaacagccaggagagc---acactttgtaaattg |
128 |
Q |
| |
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||||| ||||| ||||||||||||||| |||| |||||||| || || ||||| ||| |||||||||| || ||| | || ||||||||||||| | |
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| T |
48372324 |
gagagcgaaagcacatcaactccatcagaaattgcatcgtcaaacgccgcaagtatggcagagccagagcaaccaatattgctgcacactttgtaaatcg |
48372225 |
T |
|
| Q |
129 |
ccaacctcgattcaggagacccaccttttgctgtccctgccgcgagatcataatatgatgcaccactcac |
198 |
Q |
| |
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|||||||||||||||| || |||||||||||| ||||| |||||||| |||| ||||||||||||||||| |
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| T |
48372224 |
ccaacctcgattcaggggaaccaccttttgctatcccttccgcgagaccatagtatgatgcaccactcac |
48372155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 26097736 - 26097946
Alignment:
| Q |
32 |
gagagtgaaagtacatcaactccatcataaatggcatcgtcgaatgcagcaagcatgccagagccagaacagccaggagagcacactttgtaaattgcca |
131 |
Q |
| |
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|||| |||||||| ||||||||| ||| |||| ||||||||||| || ||||| ||| |||||||||| || ||| ||||||||||||||||| || |
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| T |
26097736 |
gagactgaaagtatatcaactccgtcagaaattgcatcgtcgaaagccgcaaggatggcagagccagagcaaccaaagttgcacactttgtaaattgaca |
26097835 |
T |
|
| Q |
132 |
acctcgattcaggagacccaccttttgctgtccctgccgcgagatcataatatgatgcaccactcacaaagttccctgcagccgttgaagctgtgtgggt |
231 |
Q |
| |
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|||| ||| | || || ||||||||||| || ||||| || ||| || | ||||||||||||||||| | |||||| || || ||||| ||||||||||| |
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| T |
26097836 |
accttgatccgggggatccaccttttgccgttcctgctgcaagaccaaagtatgatgcaccactcacgacgttccccgccgcggttgacgctgtgtgggt |
26097935 |
T |
|
| Q |
232 |
cccatgtccat |
242 |
Q |
| |
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||||| |||| |
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| T |
26097936 |
tccatgcccat |
26097946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 53321068 - 53321155
Alignment:
| Q |
109 |
agagcacactttgtaaattgccaacctcgattcaggagacccaccttttgctgtccctgccgcgagatcataatatgatgcaccactc |
196 |
Q |
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|||||||||||||||||| |||||||| |||| ||||||||| ||||||| ||||||| || ||| | || ||||||||||||||| |
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| T |
53321068 |
agagcacactttgtaaatcgccaaccttgattgaggagaccccccttttgatgtcccttttgcaagaccgtagtatgatgcaccactc |
53321155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 140302 - 140342
Alignment:
| Q |
44 |
acatcaactccatcataaatggcatcgtcgaatgcagcaag |
84 |
Q |
| |
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|||||||||||||||| ||||||||| || ||||||||||| |
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| T |
140302 |
acatcaactccatcatcaatggcatcatcaaatgcagcaag |
140342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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