View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_high_3 (Length: 572)
Name: NF3576_high_3
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 9 - 556
Target Start/End: Original strand, 53661160 - 53661707
Alignment:
| Q |
9 |
gacatcatcaactaaaatacaataagccagtaaaatttaaaagtaatcaatgtgagcttactccagtcttatctatcaaaagattagctgacttgaggtc |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53661160 |
gacagcatcaactaaaatacaataagccagtaaaatttaaaagtaatcaatgtgagcttactccagtcttatctatcaaaagattagctgacttgaggtc |
53661259 |
T |
|
| Q |
109 |
ccggtgtatgatatcattctgatgcaaatatttcatcccttcagaaacatcaatggctacttttagcaaagatggaagagcaaggacagttttctgttta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53661260 |
ccggtgtatgatatcattctgatgcaaatatttcatcccttcagaaacatcaatggctacttttagcaaagatggaagagcaaggacagttttctgttta |
53661359 |
T |
|
| Q |
209 |
tgaagaaggtcgtacatacttccaccagacaaatattctgagataaaaacaagttatattgaaatcgacattgctttttccaatacattgtcaaagtcat |
308 |
Q |
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| T |
53661360 |
tgaagaaggtcgtacatacttccaccagacaaatattctgagataaaaacaagttatattgaaatcgacaatgctttttccaatacattgtcaaagtcat |
53661459 |
T |
|
| Q |
309 |
aatcaataggaaaaatttaactaagaatatgtgacttagtaaatttgacctgtgacaaggcaaaggtttgggggttttgtacatgcaccaacaaatttga |
408 |
Q |
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| T |
53661460 |
aatcaataggaaaaatttaactaagaatatgtgacttagtaaatttgacctgtgacaaggcagaggtttgggggttttgtacatgcaccaacaaatttga |
53661559 |
T |
|
| Q |
409 |
caacattcctgtgctgaattttactgcaacaattcaattaaaataaatatattgaatatcaattacaatatattaaagaatattatcgtttctctttatt |
508 |
Q |
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| T |
53661560 |
caacattcctgtgctgaattttactgcaacaattcaattaaaataaatatattgaatatcaattacaatatattaaagaatattatcgtttctctttatt |
53661659 |
T |
|
| Q |
509 |
ttcatttttactctgattggacaaattttcatattgaaaattatattt |
556 |
Q |
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| T |
53661660 |
ttcatttttactctgattggacaaattttcatattgaaaattatattt |
53661707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 381 - 448
Target Start/End: Original strand, 8450384 - 8450451
Alignment:
| Q |
381 |
ggttttgtacatgcaccaacaaatttgacaacattcctgtgctgaattttactgcaacaattcaatta |
448 |
Q |
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| T |
8450384 |
ggttttgtacaggcaccaataaatttgataacattcttgtgctgaattttactgcaatagttcaatta |
8450451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 8450207 - 8450263
Alignment:
| Q |
200 |
ttctgtttatgaagaaggtcgtacatacttccaccagacaaatattctgagataaaa |
256 |
Q |
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|||||| |||| |||| |||||||||| ||||||||| || ||||||||||| |||| |
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| T |
8450207 |
ttctgtatatgcagaaagtcgtacatatttccaccaggcatatattctgagaaaaaa |
8450263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 9207957 - 9207854
Alignment:
| Q |
83 |
atcaaaagattagctgacttgaggtcccggtgtatgatatcattctgatgcaaatatttcatcccttcagaaacatcaatggctacttttagcaaagatg |
182 |
Q |
| |
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|||| |||||| || | ||||||||||| ||| || |||| ||| || |||||||| ||||| || | ||||||||||||||||||||||| ||||||| |
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| T |
9207957 |
atcagaagattggcagtcttgaggtccctgtgaataatattattttggtgcaaatagttcattcccttggaaacatcaatggctacttttagtaaagatg |
9207858 |
T |
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| Q |
183 |
gaag |
186 |
Q |
| |
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|||| |
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|
| T |
9207857 |
gaag |
9207854 |
T |
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