View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3576_high_33 (Length: 304)
Name: NF3576_high_33
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_high_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 267
Target Start/End: Complemental strand, 24755395 - 24755144
Alignment:
| Q |
13 |
aaaagattaataatcttattctgtctatcataggctactctcagcctgaagttcaaaatccaagttacttcaaagctcctcatattcttgatattgtcca |
112 |
Q |
| |
|
||||||||||||||||| |||| ||||||| |||||||||||| || | |||||| |||||| ||||| || |||||||| || ||||||||||||| |
|
|
| T |
24755395 |
aaaagattaataatctttttctatctatcacaggctactctcactctcaggttcaagatccaaactactttaattctcctcatgttattgatattgtcca |
24755296 |
T |
|
| Q |
113 |
ctttttcgttaacagtaaaggtgagagaaaacatgatggggttggtaattatgtagtacccattattggtacagatcagcatccgaagcccaaactaaat |
212 |
Q |
| |
|
| ||||||||||||| |||||||||||||| | | | ||||||||||||||||||||||||| | |||| |||||||| |||||||||||||| |
|
|
| T |
24755295 |
cgttttcgttaacagggaaggtgagagaaaaagtcacgtggttggtaattatgtagtacccattgatagtac---tcagcatctgaagcccaaactaatg |
24755199 |
T |
|
| Q |
213 |
cgctgtgcttcgaggctccaagctgcaggggttactatcaaacttcttgaggaaa |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24755198 |
cgctgtgcttcgaggctccaagctgcaggggttactatcaaacttgctgaggaaa |
24755144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 248
Target Start/End: Original strand, 24842650 - 24842817
Alignment:
| Q |
87 |
gctcctcatattcttgatattgtccactttttcgttaacagtaa------aggtgagagaaaacatgatggggttggtaattatgtagtacccattattg |
180 |
Q |
| |
|
||||||||||||||||||| ||||||||| | |||||||| ||| | |||||||| || ||||| ||| || ||| |||||||| ||||||||| |
|
|
| T |
24842650 |
gctcctcatattcttgatagtgtccacttctccgttaacaataagatgaaaagtgagagagaaagtgatgcggtgggcaatcatgtagtatccattattg |
24842749 |
T |
|
| Q |
181 |
gtacagatcagcatccgaagcccaaactaaatcgctgtgcttcgaggctccaagctgcaggggttact |
248 |
Q |
| |
|
|| |||| ||||||||| |||||||| ||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
24842750 |
acactactcagtatccgaagctgaaactaaagcgcagtgcttcgcggctccaagctgcgggggttact |
24842817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 24897101 - 24897054
Alignment:
| Q |
91 |
ctcatattcttgatattgtccactttttcgttaacagtaaaggtgaga |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
24897101 |
ctcatattcttgatattgtccactttttcgttaacgggaaaggtgaga |
24897054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 24855832 - 24855792
Alignment:
| Q |
85 |
aagctcctcatattcttgatattgtccactttttcgttaac |
125 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24855832 |
aagcccctcacattcttgatattgtccactttttcgttaac |
24855792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University