View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_high_42 (Length: 261)
Name: NF3576_high_42
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_high_42 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 580619 - 580367
Alignment:
| Q |
9 |
atcatcaccaaagatgtatcaacaaaccaagcgcagtttttagcctcaaattttgttaggagggggaattcaagatgaacattgcgccaagatttgggtg |
108 |
Q |
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| T |
580619 |
atcataaccaaagatgtatcaacaaaccaagcgcagtttttagcctcaaattttgttaggagagggaattcaagatgaacattgcgccaagatttgggtg |
580520 |
T |
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| Q |
109 |
agttggtgttaaagtcgattccacacaagtttagaattttcaagtttcgaaatagaatatatttgctgggagcgggaacatcaacggaattaaaagaatt |
208 |
Q |
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| T |
580519 |
agtcggtgttaaagttgattccacacaagttgagaattttcaagtttcgaaatacaatatatttgctgggagcgggaacatcaacggaattaaaagaatt |
580420 |
T |
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| Q |
209 |
tcgaagcaatttcaattcttcatcgtacataggaacattaataaaggaaatgg |
261 |
Q |
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| T |
580419 |
tcgaagcaatttcaattcttcatcgtacataggaacattaataaaggaaatgg |
580367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 1200807 - 1200763
Alignment:
| Q |
32 |
aaaccaagcgcagtttttagcctcaaattttgttaggagggggaa |
76 |
Q |
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| T |
1200807 |
aaaccaatcacagtttttggcctcaaattttgttaggagtgggaa |
1200763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 8192781 - 8192831
Alignment:
| Q |
26 |
atcaacaaaccaagcgcagtttttagcctcaaattttgttaggagggggaa |
76 |
Q |
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| T |
8192781 |
atcaacaaaccaagcgcagtttttggtctcaaattttgttagaagtgggaa |
8192831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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