View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_high_45 (Length: 252)
Name: NF3576_high_45
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_high_45 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 37601395 - 37601625
Alignment:
| Q |
19 |
attattggaagtccaattgtagtaattgtagtagtaacttgcaataaagggcatctaaaacccaatcatatttttcagcaaacctttgcgcgttggaatt |
118 |
Q |
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| T |
37601395 |
attattggaagtccaattgtagtaattgtag---taacttgcaataaagggcatctaaaacccaatcatatttttcagcaaacctttgcgcgttggaatt |
37601491 |
T |
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| Q |
119 |
tggaaaccataaaatagatagatgcacgcaaacagctagtacaagtacaacaagaaacaaagaaaaataagctcattcaatcaattacctacaactttca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37601492 |
tggaaaccataaaatagatagatgcacgcaaacagctagtacaagtacaacaagaaacaaagaaaaataagctcattcaatcaattacctacaactttca |
37601591 |
T |
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| Q |
219 |
catacaagaaggaacccgttctaactaagttgct |
252 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
37601592 |
catacaagaaggaacccgttctaactaagttgct |
37601625 |
T |
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