View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_high_48 (Length: 249)
Name: NF3576_high_48
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 24107835 - 24107595
Alignment:
| Q |
1 |
aactgtcattacaaagaggatgcacagcattgcaacttcgatagcagtagcttattcttgagagggtccactttacccgcgtttccttccatcacctaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24107835 |
aactgtcattacaaagaggatgcacagcattgcaacttcgatagcagtagcttgttcttgagagggtccactttacccgcgtttccttccatcacctaca |
24107736 |
T |
|
| Q |
101 |
actttgatagcaggttatcattattttttcatacttaaattaacaatctctttgtttatttgttctgacatttacttcatttgcgaaattttcatttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24107735 |
actttgatagcaggttatcattattttttcatacttaaattaacaatctctttgtttatttgttctgacatttacttcatttgcgaaattttcatttgtt |
24107636 |
T |
|
| Q |
201 |
gaatgttatcttataaatgtttgttcttaaaatatattctt |
241 |
Q |
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|||| ||||||||||||||| |||||||| ||||| ||||| |
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| T |
24107635 |
gaatcttatcttataaatgtctgttcttacaatattttctt |
24107595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 24616268 - 24616448
Alignment:
| Q |
1 |
aactgtcattacaaagaggatgcacagcattgcaacttcgatagcagtagcttattcttgagagggtccactttacccgcgtttcc-ttccatcacctac |
99 |
Q |
| |
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||||||||||||||||||||| |||| ||||||||||| ||| |||||||||| || ||| |||| ||||||||| || ||||| ||||||| ||||| |
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| T |
24616268 |
aactgtcattacaaagaggattcacaacattgcaactttgatggcagtagcttgttgttg-gaggatccactttagtggcttttccgttccatcgcctac |
24616366 |
T |
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| Q |
100 |
aactttgatagcaggttatcattattttttcatacttaaattaacaatctctttgtttatttgttctgacatttacttcatt |
181 |
Q |
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|||| ||||||||||||||||| |||||||||| |||||||| |||||||||||||||||| |||||||||| |||||||| |
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| T |
24616367 |
aactacgatagcaggttatcatttttttttcataattaaattagcaatctctttgtttatttattctgacattcacttcatt |
24616448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 85 - 218
Target Start/End: Complemental strand, 24114452 - 24114320
Alignment:
| Q |
85 |
ccttccatcacctacaactttgatagcaggttatcattattttttcatacttaaattaacaatctctttgtttatttgttctgacatttacttcatttgc |
184 |
Q |
| |
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||||||||| |||||||||| ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||| |||||||| | |||| | |
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| T |
24114452 |
ccttccatcgcctacaacttcgatagcaggttatcattttttttt-ataattaaattaacaatctctttgtttatttattcttacatttacgtaatttac |
24114354 |
T |
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| Q |
185 |
gaaattttcatttgttgaatgttatcttataaat |
218 |
Q |
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| T |
24114353 |
gtaattttcatttgttgaatcttatcttataaat |
24114320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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