View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3576_high_52 (Length: 243)

Name: NF3576_high_52
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3576_high_52
NF3576_high_52
[»] chr3 (7 HSPs)
chr3 (18-243)||(24107853-24108080)
chr3 (127-241)||(24616133-24616247)
chr3 (140-230)||(24114523-24114613)
chr3 (23-100)||(24114692-24114769)
chr3 (23-100)||(24615998-24616075)
chr3 (25-100)||(24115323-24115396)
chr3 (119-183)||(24115208-24115272)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 24108080 - 24107853
Alignment:
Q  18 tgtaccaggtgccattcgtccagcaggtgtatttcacgaagctccatttggttttctgtttcaatagagccattccagactgt--agtttttctgctgcc 115  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||  |||||||||||||||    
T  24108080 tgtaccaggtgccattcgtccagcaggtgtatttcacaaagctccacttggttttctgtttcaatagagtcattccagactgtgtagtttttctgctgcc 24107981  T
Q  116 acaccttgctattgtccagattctgtaggcggttaaaaatcacagcatcagaagcagtatcaggcactgctgtagtctactgcaaatcaggccaaaaatc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24107980 acaccttgctattgtccagattctgtaggcggttaaaaatcacagcatcagaagcagtatcaggcactgctgtagtctactgcaaatcaggccaaaaatc 24107881  T
Q  216 cgaccctctgccatgtcatccaaaaaat 243  Q
    ||||||||||||||||||||||||||||    
T  24107880 cgaccctctgccatgtcatccaaaaaat 24107853  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 24616133 - 24616247
Alignment:
Q  127 ttgtccagattctgtaggcggttaaaaatcacagcatcagaagcagtatcaggcactgctgtagtctactgcaaatcaggccaaaaatccgaccctctgc 226  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| ||||||||||| ||||||||| ||||||||    
T  24616133 ttgtccagattctgtaggcggttaaaaatcacagcagcagaagcagtatcagccactgctgcagtctacagcaaatcaggctaaaaatccgcccctctgc 24616232  T
Q  227 catgtcatccaaaaa 241  Q
    ||||  |||||||||    
T  24616233 catggtatccaaaaa 24616247  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 24114613 - 24114523
Alignment:
Q  140 gtaggcggttaaaaatcacagcatcagaagcagtatcaggcactgctgtagtctactgcaaatcaggccaaaaatccgaccctctgccatg 230  Q
    ||||||||||||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  24114613 gtaggcggttaaaaatcacagaagcagaagcagtatcagccactgctgcagtctactgcaaatcaggccaaaaatccgcccctctgccatg 24114523  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 24114769 - 24114692
Alignment:
Q  23 caggtgccattcgtccagcaggtgtatttcacgaagctccatttggttttctgtttcaatagagccattccagactgt 100  Q
    ||||||| ||||| ||||||||||||||||||||||||||| |||||||||| |||| |||||| |||| ||||||||    
T  24114769 caggtgctattcggccagcaggtgtatttcacgaagctccacttggttttctatttcgatagagtcatttcagactgt 24114692  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 24615998 - 24616075
Alignment:
Q  23 caggtgccattcgtccagcaggtgtatttcacgaagctccatttggttttctgtttcaatagagccattccagactgt 100  Q
    ||||||| ||||| ||||||||||||||||||||||||| | ||||||||||||||| |||||| ||||| |||||||    
T  24615998 caggtgctattcggccagcaggtgtatttcacgaagctcgacttggttttctgtttcgatagagtcattctagactgt 24616075  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 24115396 - 24115323
Alignment:
Q  25 ggtgccattcgtccagcaggtgtatttcacgaagctccatttggttttctgtttcaatagagccattccagactgt 100  Q
    ||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||| ||  || |||||||||||||    
T  24115396 ggtgctattcggccagcaggtgtatttcatgaagctccacttggttttctgtttcgat--agtcattccagactgt 24115323  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 24115272 - 24115208
Alignment:
Q  119 ccttgctattgtccagattctgtaggcggttaaaaatcacagcatcagaagcagtatcaggcact 183  Q
    |||||||| |||||||| |||| ||||||||||||| |||||||   |  |||||||||||||||    
T  24115272 ccttgctactgtccagaatctgcaggcggttaaaaaccacagcacatgcggcagtatcaggcact 24115208  T

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