View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_high_56 (Length: 241)
Name: NF3576_high_56
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_high_56 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 26744980 - 26745203
Alignment:
| Q |
1 |
catggggtaagtgttggaagcgagtatttgaacttgtcttgttgtcacatgaaagttggaagcttggtttgcacccttggaaccagtcttgattatcaat |
100 |
Q |
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| T |
26744980 |
catggggtaagtgttggaagcgagtatttgaacttgtcttgttgtcacatgaaagttggaagcttggtttgcacccttggaaccagtcttgattatcgat |
26745079 |
T |
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| Q |
101 |
cctgatataacctggaaggcacgaacactttctaccactacggaaattataactgcaaacgccattgggtccacaaatcccctgaatattacaagaacct |
200 |
Q |
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| T |
26745080 |
cctgatataacctggaaggcacgaacactttctaccactacggaaattataactgcaaacgccattgggtccacaaatcccctgaatattacaagaacct |
26745179 |
T |
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| Q |
201 |
atgcgaaattgcgctgataccgac |
224 |
Q |
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| T |
26745180 |
atacgaaattgcgctgataccgac |
26745203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 26693879 - 26693747
Alignment:
| Q |
1 |
catggggtaagtgttggaagcgagtatttgaacttgtcttgttgtcacatgaaagttggaagcttggtttgcacccttggaaccagtcttgattatcaat |
100 |
Q |
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| T |
26693879 |
catggggtaagcgttggaagcgagtctttgattctgttttgttgttgcatgaaagttggaagcttggtttacacccttgagaccaatcttgattattgat |
26693780 |
T |
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| Q |
101 |
cctgatataacctggaaggcacgaacactttct |
133 |
Q |
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| T |
26693779 |
cctgttataaccaggaagacacacacactttct |
26693747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 26676410 - 26676499
Alignment:
| Q |
48 |
catgaaagttggaagcttggtttgcacccttggaaccagtcttgattatcaatcctgatataacctggaaggcacgaacactttctacca |
137 |
Q |
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| T |
26676410 |
catgaaagttggaagtttggtttgcacccctgagaccaattttgattatcgatcctgctataaccgggaacacacaaacactttctacca |
26676499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 26714743 - 26714844
Alignment:
| Q |
35 |
tgtcttgttgtcacatgaaagttggaagcttggtttgcacccttggaaccagtcttgattatcaatcctgatataacctggaaggcacgaacactttcta |
134 |
Q |
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| T |
26714743 |
tgtcttgttattgcatgaaaattggaagcttggtttgcacccttgagaccaatcttggttattgattatgctataacctagaagacacgaacattttcta |
26714842 |
T |
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| Q |
135 |
cc |
136 |
Q |
| |
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|| |
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| T |
26714843 |
cc |
26714844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 136
Target Start/End: Original strand, 26737995 - 26738080
Alignment:
| Q |
51 |
gaaagttggaagcttggtttgcacccttggaaccagtcttgattatcaatcctgatataacctggaaggcacgaacactttctacc |
136 |
Q |
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|||| |||||||||||||||||||||||| |||| ||||| |||| || || ||||||||||||| |||||||| |||||||| |
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| T |
26737995 |
gaaaattggaagcttggtttgcacccttgagaccaatcttggttattgattatgctataacctggaagacacgaacattttctacc |
26738080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 26689680 - 26689632
Alignment:
| Q |
48 |
catgaaagttggaagcttggtttgcacccttggaaccagtcttgattat |
96 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
26689680 |
catgaaagttggaagcttggtttgcacccttgtgaccaatcttgattat |
26689632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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