View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_high_58 (Length: 239)
Name: NF3576_high_58
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_high_58 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 27147048 - 27146831
Alignment:
| Q |
2 |
tattacaacaccaatatgaagtcttcatatatatccataatatttaatttttccaacaaactagctcagttcatacatggtcttcacttttaacatacag |
101 |
Q |
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| T |
27147048 |
tattacaacaccaatatgaagtcttcatatatatccataatatttaatttttccaacaaactagctcagttcata----gtcttcacttttaacatacag |
27146953 |
T |
|
| Q |
102 |
tggtgttgattatacaggaaataaatatcattacacctcaacattatttcagcttgtctactttgcctctaatctcatcttgtggaggtttttcaaacaa |
201 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27146952 |
tggtgttgattatacagtaaataaatatcattacacctcaacattatttcaccttgtctactttgcctctaatctcatcttgtggaggtttttcaaacaa |
27146853 |
T |
|
| Q |
202 |
tgatcaatagcaaggtcctcta |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
27146852 |
tgatcaatagcaaggtcctcta |
27146831 |
T |
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