View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3576_high_59 (Length: 239)
Name: NF3576_high_59
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_high_59 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 30983867 - 30983644
Alignment:
| Q |
16 |
cttacaccccaaatcaatgaaatcagccactttagcacttgaaactacgtatgcatcacgaggttcatcctctacgaggcaagaaatcgtttgagaaact |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| || | || ||||||||||||||||| |||||||| |||||||||||| |||||||||| |
|
|
| T |
30983867 |
cttacaccccaaatcaatgaaatcagccactttcgcactcgacattaagtatgcatcacgaggtttatcctctatgaggcaagaaataaattgagaaact |
30983768 |
T |
|
| Q |
116 |
tctgaacccaaagaagacgagtatggatcgagaagagaactacactcatataatagcgtatacttctcataattggaagtgtagttgaagaattccgaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30983767 |
tctgaacccaaagaagacgagtatggatcgggaagagaaccacactcatataatagcgtatacttctcataattggaagtgtaattgaagaattccgaat |
30983668 |
T |
|
| Q |
216 |
ctaggattacattgatatatttct |
239 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
30983667 |
ctagggttacattgatatatttct |
30983644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 30990031 - 30989808
Alignment:
| Q |
16 |
cttacaccccaaatcaatgaaatcagccactttagcacttgaaactacgtatgcatcacgaggttcatcctctacgaggcaagaaatcgtttgagaaact |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| || | || ||||||||||||||||| |||||||| |||||||||||| |||||||||| |
|
|
| T |
30990031 |
cttacaccccaaatcaatgaaatcagccactttcgcactcgacattaagtatgcatcacgaggtttatcctctatgaggcaagaaataaattgagaaact |
30989932 |
T |
|
| Q |
116 |
tctgaacccaaagaagacgagtatggatcgagaagagaactacactcatataatagcgtatacttctcataattggaagtgtagttgaagaattccgaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30989931 |
tctgaacccaaagaagacgagtatggatcgggaagagaaccacactcatataatagcgtatacttctcataattggaagtgtaattgaagaattccgaat |
30989832 |
T |
|
| Q |
216 |
ctaggattacattgatatatttct |
239 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
30989831 |
ctagggttacattgatatatttct |
30989808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 31009752 - 31009529
Alignment:
| Q |
16 |
cttacaccccaaatcaatgaaatcagccactttagcacttgaaactacgtatgcatcacgaggttcatcctctacgaggcaagaaatcgtttgagaaact |
115 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| | | |||| |||||||||||| |||||||||| |
|
|
| T |
31009752 |
cttacatcccaaagaaatgaaatcagccacttttgcacttgagactacgtatgcatcacgaggtttaccatctatgaggcaagaaataaattgagaaact |
31009653 |
T |
|
| Q |
116 |
tctgaacccaaagaagacgagtatggatcgagaagagaactacactcatataatagcgtatacttctcataattggaagtgtagttgaagaattccgaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31009652 |
tctgaacccaaagaagacgagtatggatcgggaagagaaccacactcatataatagcgtatacttctcataattggaagtgtaattgaagaattccgaat |
31009553 |
T |
|
| Q |
216 |
ctaggattacattgatatatttct |
239 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
31009552 |
ctagggttacattgatatatttct |
31009529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 30941969 - 30941748
Alignment:
| Q |
18 |
tacaccccaaatcaatgaaatcagccactttagcacttgaaactacgtatgcatcacgaggttcatcctctacgaggcaagaaatcgtttgagaaacttc |
117 |
Q |
| |
|
|||| |||||| |||| |||||| |||||||||||||||| || | |||||||| |||||||| | |||||| ||||||||||||| |||||||||||| |
|
|
| T |
30941969 |
tacatcccaaaccaataaaatcaaccactttagcacttgacaccaagtatgcattacgaggtttaccctctatgaggcaagaaatcacttgagaaacttc |
30941870 |
T |
|
| Q |
118 |
tgaacccaaagaagacgagtatggatcgagaagagaactacactcatataatagcgtatacttctcataattggaagtgtagttgaagaattccgaatct |
217 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||| | |||||| || ||||| |||||||| ||||| |||||||||||||||||||| ||| ||||| |
|
|
| T |
30941869 |
tgaactcaaagaagacgagtatggatcaggaagagggccacactcgtacaatagtgtatacttttcatacttggaagtgtagttgaagaaatccaaatct |
30941770 |
T |
|
| Q |
218 |
aggattacattgatatatttct |
239 |
Q |
| |
|
||| ||||| |||||||||||| |
|
|
| T |
30941769 |
aggtttacaatgatatatttct |
30941748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University