View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3576_high_60 (Length: 237)

Name: NF3576_high_60
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3576_high_60
NF3576_high_60
[»] chr2 (7 HSPs)
chr2 (1-222)||(11821065-11821286)
chr2 (1-221)||(11835079-11835299)
chr2 (46-200)||(11933638-11933792)
chr2 (46-200)||(11946859-11947013)
chr2 (33-174)||(11917454-11917595)
chr2 (26-128)||(11787190-11787292)
chr2 (76-218)||(11803650-11803792)
[»] chr4 (10 HSPs)
chr4 (34-216)||(38090579-38090761)
chr4 (32-218)||(38125411-38125597)
chr4 (70-215)||(38129402-38129547)
chr4 (118-222)||(36107919-36108023)
chr4 (118-215)||(36100660-36100757)
chr4 (87-152)||(38061991-38062056)
chr4 (97-177)||(38081821-38081901)
chr4 (87-170)||(38072726-38072809)
chr4 (164-218)||(36080101-36080155)
chr4 (123-215)||(21482656-21482748)
[»] chr6 (1 HSPs)
chr6 (112-222)||(6838674-6838784)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 11821065 - 11821286
Alignment:
Q  1 gatataaagaacgaagttgcttacgttcaagctggtgctacacttggtgaagtttattatagaatttatgagaagagtaaggttcatggttttcctgctg 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11821065 gatataaagaacgaagttgcttacgttcaaggtggtgctacacttggtgaagtttattatagaatttatgagaagagtaaggttcatggttttcctgctg 11821164  T
Q  101 gtgtttgtccaactgttggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgc 200  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11821165 gtgtgtgtccaactgtcggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgc 11821264  T
Q  201 tgaaattgttgatgttaagggt 222  Q
    ||||||||||||||||||||||    
T  11821265 tgaaattgttgatgttaagggt 11821286  T

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Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11835299 - 11835079
Alignment:
Q  1 gatataaagaacgaagttgcttacgttcaagctggtgctacacttggtgaagtttattatagaatttatgagaagagtaaggttcatggttttcctgctg 100  Q
    |||||||| || |||||||||||  ||||||||||||||||||||||||||||||| || ||||||| ||| |||||||| |||||||| ||||||||||    
T  11835299 gatataaaaaatgaagttgcttatattcaagctggtgctacacttggtgaagtttactacagaatttctgaaaagagtaaagttcatggatttcctgctg 11835200  T
Q  101 gtgtttgtccaactgttggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgc 200  Q
    |||| ||||||||||| ||||||||||||||  |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  11835199 gtgtgtgtccaactgtcggtgttggtggtcacgtcagtggtggagggtatggtgcaatgttgagaaaatatggtttatctgttgataatattattgatgc 11835100  T
Q  201 tgaaattgttgatgttaaggg 221  Q
    |||||||||||||||||||||    
T  11835099 tgaaattgttgatgttaaggg 11835079  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 200
Target Start/End: Original strand, 11933638 - 11933792
Alignment:
Q  46 ggtgaagtttattatagaatttatgagaagagtaaggttcatggttttcctgctggtgtttgtccaactgttggtgttggtggtcatttcagtggtggag 145  Q
    |||||| |||| ||||||||| |||| || ||||| |||||||||||||| || || |||||||| || ||||||||||| || ||||| |||||||| |    
T  11933638 ggtgaactttactatagaattaatgaaaaaagtaaagttcatggttttccggccggcgtttgtcctaccgttggtgttggaggacatttaagtggtggtg 11933737  T
Q  146 ggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgc 200  Q
    | |||||||  ||| || ||||||||||| | || |||||||||||||| |||||    
T  11933738 gatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgc 11933792  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 200
Target Start/End: Original strand, 11946859 - 11947013
Alignment:
Q  46 ggtgaagtttattatagaatttatgagaagagtaaggttcatggttttcctgctggtgtttgtccaactgttggtgttggtggtcatttcagtggtggag 145  Q
    |||||| |||| ||||||||| |||| || ||||| |||||||||||||| || || |||||||| || ||||||||||| || ||||| |||||||| |    
T  11946859 ggtgaactttactatagaattaatgaaaaaagtaaagttcatggttttccggccggcgtttgtcctaccgttggtgttggaggacatttaagtggtggtg 11946958  T
Q  146 ggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgc 200  Q
    | |||||||  ||| || ||||||||||| | || |||||||||||||| |||||    
T  11946959 gatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgc 11947013  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 174
Target Start/End: Original strand, 11917454 - 11917595
Alignment:
Q  33 tggtgctacacttggtgaagtttattatagaatttatgagaagagtaaggttcatggttttcctgctggtgtttgtccaactgttggtgttggtggtcat 132  Q
    |||||| ||||||||||||||||| |||||||||  |||||| |||||   ||||| |||| | || || |||||||| |||||||||||||| || |||    
T  11917454 tggtgcaacacttggtgaagtttactatagaattgctgagaaaagtaaaactcatgcttttgcggccggcgtttgtccgactgttggtgttggaggacat 11917553  T
Q  133 ttcagtggtggagggtatggtacaatgttgcgaaaatatggt 174  Q
     | |||||||  || |||||||   || || |||||||||||    
T  11917554 gttagtggtgctggttatggtaacttgatgagaaaatatggt 11917595  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 11787292 - 11787190
Alignment:
Q  26 ttcaagctggtgctacacttggtgaagtttattatagaatttatgagaagagtaaggttcatggttttcctgctggtgtttgtccaactgttggtgttgg 125  Q
    ||||||| ||||||||  | || |||||||||||||||||  ||||||| ||| | ||||||||||| ||||||||| ||||  ||| | | ||||||||    
T  11787292 ttcaagccggtgctactatcggcgaagtttattatagaatacatgagaaaagtgatgttcatggtttccctgctggtctttgcacaagtttaggtgttgg 11787193  T
Q  126 tgg 128  Q
    |||    
T  11787192 tgg 11787190  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 218
Target Start/End: Complemental strand, 11803792 - 11803650
Alignment:
Q  76 agtaaggttcatggttttcctgctggtgtttgtccaactgttggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtt 175  Q
    ||||| |||||||| ||||| ||||||  |||||| ||||||||||| || ||||| |||||||| || || | ||||||| | ||  |||||||||||     
T  11803792 agtaacgttcatggatttccagctggtagttgtcctactgttggtgtaggaggtcacttcagtggaggtggatttggtacattatttagaaaatatggtc 11803693  T
Q  176 tatctgttgataatattattgatgctgaaattgttgatgttaa 218  Q
    |  | | ||||||| | ||||||||| |||| || ||||||||    
T  11803692 ttgcagctgataatgtaattgatgctcaaatggtagatgttaa 11803650  T

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Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 34 - 216
Target Start/End: Original strand, 38090579 - 38090761
Alignment:
Q  34 ggtgctacacttggtgaagtttattatagaatttatgagaagagtaaggttcatggttttcctgctggtgtttgtccaactgttggtgttggtggtcatt 133  Q
    ||||||||| ||||||||||||||||||| |||| |||||  ||||  |||||||||||||| ||||| |||||||| ||||||||||||||||| ||||    
T  38090579 ggtgctacaattggtgaagtttattataggatttctgagattagtagtgttcatggttttccagctggggtttgtcctactgttggtgttggtggacatt 38090678  T
Q  134 tcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgtt 216  Q
    | |||||||| ||||||||||  ||| || |||||| ||| |||||||||||||||||| | |||||| | ||||||||||||    
T  38090679 ttagtggtggggggtatggtaacatgatgagaaaatttgggttatctgttgataatattttggatgctaagattgttgatgtt 38090761  T

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Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 38125411 - 38125597
Alignment:
Q  32 ctggtgctacacttggtgaagtttattatagaatttatgagaagagtaaggttcatggttttcctgctggtgtttgtccaactgttggtgttggtggtca 131  Q
    ||||||||| ||||||||| ||||||||||| || |  ||||||||||| |||||||| ||||||||||| ||||||   ||||||||||||||||||||    
T  38125411 ctggtgctatacttggtgaggtttattataggatatgggagaagagtaaagttcatggctttcctgctggggtttgtattactgttggtgttggtggtca 38125510  T
Q  132 tttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgttaa 218  Q
     || |||||||||||||||||||  ||| || |||||| ||| || ||| |||||||| || |||||||||||||||||||||||||    
T  38125511 cttgagtggtggagggtatggtaacatgatgagaaaatttgggttgtctattgataatgttgttgatgctgaaattgttgatgttaa 38125597  T

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Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 70 - 215
Target Start/End: Original strand, 38129402 - 38129547
Alignment:
Q  70 gagaagagtaaggttcatggttttcctgctggtgtttgtccaactgttggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaat 169  Q
    ||||| ||||| |||||||| |||||||| || |||||||||||||||||||||||||| ||||| ||||| |||||||||||||  ||| || ||||||    
T  38129402 gagaaaagtaaagttcatggctttcctgccggcgtttgtccaactgttggtgttggtggccatttgagtggaggagggtatggtaacatgatgagaaaat 38129501  T
Q  170 atggtttatctgttgataatattattgatgctgaaattgttgatgt 215  Q
      || |||||| ||||||||||| |||||||| ||||| |||||||    
T  38129502 tcgggttatctattgataatattgttgatgctaaaattattgatgt 38129547  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 36107919 - 36108023
Alignment:
Q  118 ggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgtta 217  Q
    |||| |||||||||||||  |||||| ||||||||||   || || |||||| |||| | |||||||||||||||||||||||  |||| ||||||||||    
T  36107919 ggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttggtctttctgttgataatattattgatgcaaaaatggttgatgtta 36108018  T
Q  218 agggt 222  Q
    |||||    
T  36108019 agggt 36108023  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 36100660 - 36100757
Alignment:
Q  118 ggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgt 215  Q
    |||| |||||||||||||  |||||| ||||||||||   || || |||||| |||| | ||| |||||||||| ||||||||  |||||||||||||    
T  36100660 ggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttggtctttctattgataatatcattgatgcaaaaattgttgatgt 36100757  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 38062056 - 38061991
Alignment:
Q  87 tggttttcctgctggtgtttgtccaactgttggtgttggtggtcatttcagtggtggagggtatgg 152  Q
    |||||||||||| |||| |||||| ||||| ||||||||||| || ||||||||||| || |||||    
T  38062056 tggttttcctgccggtgcttgtcctactgtaggtgttggtggacacttcagtggtggtggctatgg 38061991  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 38081821 - 38081901
Alignment:
Q  97 gctggtgtttgtccaactgttggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggttta 177  Q
    ||||||| |||||| ||  | ||||||||||| |||||||||||||| || ||||| ||  ||||||| ||||||||||||    
T  38081821 gctggtgcttgtcctacaataggtgttggtggacatttcagtggtggcggctatggaaccttgttgcgtaaatatggttta 38081901  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 170
Target Start/End: Original strand, 38072726 - 38072809
Alignment:
Q  87 tggttttcctgctggtgtttgtccaactgttggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaata 170  Q
    |||||| ||||  ||||||||||| ||||| ||||||||||| || ||||||||||| || ||||| ||  ||||||| |||||    
T  38072726 tggtttccctggaggtgtttgtcctactgtaggtgttggtggacacttcagtggtggtggctatggaaccttgttgcgtaaata 38072809  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 36080101 - 36080155
Alignment:
Q  164 gaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgttaa 218  Q
    |||||| |||| |||||||||||||||| ||||| ||  ||||||||||||||||    
T  36080101 gaaaatttggtctatctgttgataatataattgacgcaaaaattgttgatgttaa 36080155  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 21482656 - 21482748
Alignment:
Q  123 tggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgt 215  Q
    ||||||||||||   |||||| || ||||| |  ||| || |||||| |||| | |||||||||||||||||||| ||  |||||||||||||    
T  21482656 tggtggtcatttttctggtggtggatatggaaatatgatgagaaaatttggtctttctgttgataatattattgacgcaaaaattgttgatgt 21482748  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 6838674 - 6838784
Alignment:
Q  112 actgttggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttg 211  Q
    ||||| |||| |||||||||||||  |||||| |||||||| |   || || |||||| |||| | ||| |||||||||||||||| ||  |||||||||    
T  6838674 actgtaggtgctggtggtcatttctctggtggtgggtatggaaatttgatgagaaaatttggtctttctattgataatattattgacgcaaaaattgttg 6838773  T
Q  212 atgttaagggt 222  Q
    |||||||||||    
T  6838774 atgttaagggt 6838784  T

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