View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3576_high_65 (Length: 224)
Name: NF3576_high_65
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_high_65 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 33376805 - 33377013
Alignment:
| Q |
1 |
ggacttatttgtcgcaaatcacaaaattccaaattttattctcatccaaacaatttcttgtaagcaagaaaccaagcagtcaaagaccctaaaaaacaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33376805 |
ggacttatttgtcgcaaatcacaaaattccaaattttattctcatccaaacaatttcctgtaagcacgaaaccaagcagtcaaagaccctaaaaaacaag |
33376904 |
T |
|
| Q |
101 |
tccattctaccataattttactttaccaaaatgttcaatcaaatagattttactatctgaatgcttctctaagcaacacaacaaacaataatcagtagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33376905 |
tccattctaccataattttactttaccaaaatgttcaatcaaatagattttactatctgaatgcttctctaagcaacacaacaaacaataatcagtagaa |
33377004 |
T |
|
| Q |
201 |
gtcacaagt |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
33377005 |
gtcacaagt |
33377013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 44912664 - 44912490
Alignment:
| Q |
1 |
ggacttatttgtcgcaaa-tcacaaaattccaaattttattctcatccaaacaatttcttgtaagcaagaaaccaagcagtcaa---------agaccct |
90 |
Q |
| |
|
||||||||||||| || | || |||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| | ||||||| |
|
|
| T |
44912664 |
ggacttatttgtcacagactctcaaaatgtcaaattttattctcatccaaacaatttcctgtaagcacgaaaccaagcagtcgagtatattttagaccct |
44912565 |
T |
|
| Q |
91 |
aaaaaacaagtccattctaccataattttactttaccaaaatgttcaatcaaatagattttactatctgaatgcttctct |
170 |
Q |
| |
|
||| ||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44912564 |
aaacaacaaatccattctaccataattttac-----cgaaatgttcaatcaaatagatcttactatctgaatgcttctct |
44912490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University