View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_high_67 (Length: 217)
Name: NF3576_high_67
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_high_67 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 53175122 - 53175307
Alignment:
| Q |
16 |
caaaaatttcatgaatattatactatgaactttttcnnnnnnnnncaaacaagtcttaatcacctgagttgaagccattggtagcatcaaacaactcttc |
115 |
Q |
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| T |
53175122 |
caaaaatttcatgaatattatactatgaactttttcaaaaaaa--caaacaagtcttaatcacctgagttgaagccattggtagcatcaaacaactcttc |
53175219 |
T |
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| Q |
116 |
ataagagaaacatttccaagttggtctttgacaagtttcttcttcatatggaagaatcttcaagctcttttcattttcttcacctttg |
203 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53175220 |
ataagagaaacatttccatgttggtttttgacaagtttcttcttcatatggaagaatcttcaagctcttttcattttcttcacctttg |
53175307 |
T |
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