View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_high_9 (Length: 493)
Name: NF3576_high_9
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Original strand, 6057223 - 6057708
Alignment:
| Q |
1 |
acatcaatgtcccttatgtgggaaagtttgttccaaactggagggtctttcatgtggcacctttctttcagcaaaggacatccaatgatgtaaagattta |
100 |
Q |
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| T |
6057223 |
acatcaatgtcccttatgtgggaaattttgttccaaacttgagggtctttcatgtggcacctttctttcagcaaaggacatccaatgatgtaaagattta |
6057322 |
T |
|
| Q |
101 |
gtagtgaggccggcagtgtttctccaaccatgttctccaattttgggcagtccctaattcttaactgttggagggaggtgagatggataaggcccttaca |
200 |
Q |
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| T |
6057323 |
gtagtgaggctggcagtgtttctccaaccatgttctccaattgtgggcagtccctaattcttaactgttggagggaggtgagatggataaggcccttaca |
6057422 |
T |
|
| Q |
201 |
atccaacatctccaaactagaaaatgtaagtagtgttagagacttaagggaagcatgtaacaaaccttcctttgggaaagacttgatcccatcacatgga |
300 |
Q |
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| T |
6057423 |
atccaacatttccaaactagaaaatgtaagtagtgttagagacttaagggaagcatgtaacaaaccttcctttgggaaagatttgatcccatcacatgga |
6057522 |
T |
|
| Q |
301 |
ccttgaattgttacatcagtaagcatgtccatggaaggccaggacaggccagtaagtagtttctcgcaattcatgatgcgaatcgatctcaacttaggtg |
400 |
Q |
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| T |
6057523 |
ccttgaattgttacatcagtaagcatgtccatggaaggccaggacagaccagtaagtagtttctcgcaattcatgatgcgaatcgatctcaacttaggtg |
6057622 |
T |
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| Q |
401 |
gcataccactttcgggaaatgattcaatttctggacagttttctagtcggaaatattctaactttggaagaagaatgttcatctca |
486 |
Q |
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| T |
6057623 |
gcataccactttcggggaatgattcaatttctggacagttttctagtcggaaatattctaactttggaagaagaatgttcatctca |
6057708 |
T |
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