View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3576_low_1 (Length: 891)

Name: NF3576_low_1
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3576_low_1
NF3576_low_1
[»] chr3 (28 HSPs)
chr3 (48-884)||(37128139-37128954)
chr3 (731-801)||(20852705-20852775)
chr3 (516-609)||(25299034-25299128)
chr3 (370-440)||(54923486-54923556)
chr3 (374-495)||(40559679-40559798)
chr3 (370-471)||(47665237-47665338)
chr3 (445-497)||(48489430-48489482)
chr3 (371-485)||(10661985-10662098)
chr3 (19-75)||(37120258-37120316)
chr3 (403-497)||(44062176-44062270)
chr3 (369-495)||(48191094-48191218)
chr3 (374-495)||(15003633-15003752)
chr3 (394-495)||(47410756-47410856)
chr3 (384-495)||(31812227-31812336)
chr3 (370-421)||(9174696-9174747)
chr3 (369-495)||(43904499-43904624)
chr3 (446-495)||(7131506-7131555)
chr3 (550-587)||(22288493-22288530)
chr3 (371-476)||(33095979-33096084)
chr3 (367-407)||(44658816-44658856)
chr3 (374-412)||(10071602-10071640)
chr3 (394-495)||(41464688-41464790)
chr3 (367-440)||(2861049-2861122)
chr3 (370-471)||(4659538-4659639)
chr3 (542-587)||(22288779-22288824)
chr3 (374-495)||(28170983-28171103)
chr3 (446-495)||(50735883-50735932)
chr3 (446-495)||(50776923-50776972)
[»] chr8 (26 HSPs)
chr8 (370-497)||(40216779-40216907)
chr8 (366-497)||(28183712-28183843)
chr8 (372-495)||(5917284-5917406)
chr8 (371-482)||(39709640-39709751)
chr8 (371-486)||(40326492-40326607)
chr8 (372-497)||(11637555-11637678)
chr8 (542-599)||(35139030-35139087)
chr8 (393-497)||(14344650-14344754)
chr8 (372-467)||(41323666-41323761)
chr8 (370-495)||(1522693-1522817)
chr8 (446-495)||(24197831-24197880)
chr8 (370-495)||(31291219-31291344)
chr8 (374-495)||(40344495-40344613)
chr8 (365-412)||(12320982-12321029)
chr8 (372-495)||(32778500-32778623)
chr8 (370-471)||(18641433-18641535)
chr8 (507-588)||(36782781-36782863)
chr8 (394-471)||(10006170-10006246)
chr8 (374-495)||(25063344-25063464)
chr8 (446-495)||(37820897-37820946)
chr8 (393-480)||(11021360-11021447)
chr8 (370-440)||(37820964-37821034)
chr8 (446-495)||(19649502-19649550)
chr8 (394-495)||(27817453-27817553)
chr8 (542-587)||(41207766-41207811)
chr8 (446-495)||(42007335-42007383)
[»] chr5 (26 HSPs)
chr5 (370-497)||(9599312-9599439)
chr5 (374-497)||(22792111-22792234)
chr5 (731-801)||(41000366-41000436)
chr5 (371-495)||(30527983-30528107)
chr5 (371-495)||(30568323-30568447)
chr5 (371-482)||(11408374-11408485)
chr5 (372-495)||(42645467-42645590)
chr5 (370-493)||(26526513-26526636)
chr5 (374-495)||(972598-972718)
chr5 (542-591)||(8143707-8143756)
chr5 (374-495)||(33028235-33028354)
chr5 (446-494)||(6525915-6525963)
chr5 (371-495)||(42997034-42997158)
chr5 (372-415)||(22096768-22096811)
chr5 (369-495)||(10393506-10393630)
chr5 (370-440)||(13542862-13542931)
chr5 (374-495)||(1269523-1269642)
chr5 (374-471)||(2025709-2025804)
chr5 (542-579)||(4878575-4878612)
chr5 (393-482)||(10083945-10084034)
chr5 (374-495)||(16496605-16496724)
chr5 (374-495)||(23074648-23074768)
chr5 (448-497)||(23419609-23419658)
chr5 (369-410)||(29214869-29214910)
chr5 (374-495)||(39150930-39151049)
chr5 (394-495)||(42337847-42337947)
[»] chr4 (35 HSPs)
chr4 (370-495)||(46343329-46343454)
chr4 (370-497)||(13849356-13849483)
chr4 (374-497)||(24478454-24478577)
chr4 (370-495)||(37340111-37340235)
chr4 (375-476)||(46107398-46107499)
chr4 (365-482)||(24870592-24870709)
chr4 (370-471)||(28758377-28758478)
chr4 (377-495)||(579246-579362)
chr4 (370-495)||(37759428-37759554)
chr4 (372-495)||(32057727-32057849)
chr4 (374-439)||(4431950-4432015)
chr4 (374-495)||(13632094-13632214)
chr4 (542-587)||(14964371-14964416)
chr4 (370-439)||(18427789-18427858)
chr4 (374-495)||(51578971-51579091)
chr4 (403-495)||(13389053-13389144)
chr4 (371-495)||(38944384-38944508)
chr4 (447-495)||(50981733-50981781)
chr4 (371-495)||(51675671-51675793)
chr4 (374-421)||(1945303-1945350)
chr4 (428-495)||(3037295-3037361)
chr4 (393-476)||(9696314-9696397)
chr4 (374-495)||(28187164-28187287)
chr4 (394-488)||(28983756-28983849)
chr4 (547-609)||(49236726-49236788)
chr4 (394-495)||(1052887-1052987)
chr4 (374-439)||(6328910-6328974)
chr4 (394-495)||(9569499-9569599)
chr4 (371-420)||(16868912-16868960)
chr4 (446-495)||(18371422-18371470)
chr4 (518-590)||(20580090-20580163)
chr4 (394-495)||(24712112-24712212)
chr4 (446-495)||(25586331-25586379)
chr4 (394-495)||(29894434-29894534)
chr4 (394-495)||(31263505-31263605)
[»] chr1 (36 HSPs)
chr1 (370-497)||(3628655-3628785)
chr1 (370-497)||(32947620-32947746)
chr1 (370-495)||(37186820-37186945)
chr1 (371-495)||(44836121-44836245)
chr1 (365-497)||(27868273-27868405)
chr1 (525-587)||(10895339-10895401)
chr1 (369-495)||(41651073-41651198)
chr1 (370-486)||(236570-236684)
chr1 (370-491)||(8312535-8312656)
chr1 (368-481)||(8793192-8793305)
chr1 (374-495)||(23225294-23225414)
chr1 (374-495)||(25820954-25821073)
chr1 (378-482)||(13979734-13979838)
chr1 (403-497)||(40273440-40273531)
chr1 (394-489)||(16689110-16689204)
chr1 (393-495)||(1576397-1576498)
chr1 (374-495)||(5598306-5598425)
chr1 (415-488)||(49479003-49479076)
chr1 (403-495)||(2112780-2112871)
chr1 (543-590)||(9554085-9554132)
chr1 (394-489)||(27078572-27078666)
chr1 (380-411)||(50363349-50363380)
chr1 (403-481)||(12502733-12502811)
chr1 (372-418)||(43841858-43841904)
chr1 (374-439)||(1800668-1800732)
chr1 (384-413)||(8785094-8785123)
chr1 (374-495)||(12282620-12282738)
chr1 (370-439)||(17540135-17540204)
chr1 (394-439)||(29510710-29510755)
chr1 (370-419)||(33225541-33225590)
chr1 (402-495)||(35068906-35068999)
chr1 (394-495)||(36586275-36586375)
chr1 (394-495)||(40685553-40685653)
chr1 (394-495)||(44623022-44623122)
chr1 (446-495)||(47429596-47429644)
chr1 (371-412)||(49632556-49632597)
[»] chr7 (34 HSPs)
chr7 (370-495)||(46021434-46021559)
chr7 (371-495)||(24333342-24333466)
chr7 (376-495)||(30627630-30627748)
chr7 (370-491)||(6328181-6328302)
chr7 (370-495)||(9506845-9506970)
chr7 (370-495)||(12645301-12645426)
chr7 (367-495)||(45957337-45957465)
chr7 (370-495)||(41708547-41708670)
chr7 (371-486)||(21421977-21422090)
chr7 (371-495)||(47086304-47086427)
chr7 (394-494)||(26794936-26795037)
chr7 (559-609)||(16180457-16180507)
chr7 (370-439)||(8059845-8059914)
chr7 (370-495)||(12961827-12961952)
chr7 (394-495)||(14817451-14817551)
chr7 (394-495)||(15264447-15264547)
chr7 (374-495)||(18944929-18945048)
chr7 (374-495)||(31717302-31717421)
chr7 (380-486)||(37938076-37938184)
chr7 (374-495)||(40677022-40677142)
chr7 (371-482)||(35289847-35289956)
chr7 (374-495)||(23789419-23789537)
chr7 (542-609)||(37797978-37798045)
chr7 (371-495)||(39580552-39580672)
chr7 (372-495)||(47498021-47498144)
chr7 (370-412)||(6344370-6344412)
chr7 (374-495)||(1869820-1869940)
chr7 (394-495)||(3861340-3861440)
chr7 (374-495)||(10166875-10166993)
chr7 (394-495)||(24829069-24829168)
chr7 (394-495)||(35157088-35157188)
chr7 (374-495)||(40013268-40013388)
chr7 (446-495)||(44136130-44136179)
chr7 (458-495)||(45946797-45946834)
[»] chr2 (23 HSPs)
chr2 (371-495)||(22999076-22999200)
chr2 (373-482)||(32517834-32517943)
chr2 (371-495)||(9993171-9993295)
chr2 (370-495)||(13491026-13491151)
chr2 (374-495)||(23497516-23497635)
chr2 (371-439)||(37103323-37103391)
chr2 (372-422)||(18677810-18677860)
chr2 (371-476)||(636965-637070)
chr2 (374-495)||(727293-727412)
chr2 (394-495)||(10202194-10202294)
chr2 (394-495)||(23957076-23957176)
chr2 (415-495)||(17052602-17052682)
chr2 (392-495)||(18741401-18741504)
chr2 (369-495)||(11543803-11543928)
chr2 (393-471)||(25219664-25219741)
chr2 (369-495)||(43461338-43461462)
chr2 (394-471)||(7906958-7907034)
chr2 (394-495)||(13267979-13268079)
chr2 (374-439)||(16535002-16535066)
chr2 (550-587)||(36379408-36379445)
chr2 (394-495)||(40812041-40812141)
chr2 (398-495)||(41164652-41164748)
chr2 (374-495)||(44948024-44948143)
[»] scaffold0009 (1 HSPs)
scaffold0009 (542-609)||(168755-168822)
[»] scaffold0160 (1 HSPs)
scaffold0160 (371-495)||(22084-22207)
[»] scaffold0633 (1 HSPs)
scaffold0633 (369-495)||(3798-3923)
[»] scaffold0036 (1 HSPs)
scaffold0036 (545-590)||(88282-88327)
[»] chr6 (10 HSPs)
chr6 (374-495)||(9727499-9727619)
chr6 (374-482)||(9297761-9297869)
chr6 (394-495)||(10181069-10181169)
chr6 (542-609)||(5924771-5924838)
chr6 (369-495)||(12795023-12795147)
chr6 (374-471)||(1266769-1266866)
chr6 (374-495)||(1855010-1855130)
chr6 (394-495)||(6266656-6266756)
chr6 (394-495)||(8939650-8939750)
chr6 (545-586)||(34556191-34556232)
[»] scaffold0002 (1 HSPs)
scaffold0002 (394-489)||(411672-411766)
[»] scaffold0262 (1 HSPs)
scaffold0262 (545-587)||(17585-17627)
[»] scaffold0027 (1 HSPs)
scaffold0027 (370-439)||(19372-19441)
[»] scaffold0062 (1 HSPs)
scaffold0062 (516-587)||(3003-3074)


Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 48 - 884
Target Start/End: Original strand, 37128139 - 37128954
Alignment:
Q  48 tttatagcattagttctttgtggaataaatcaaacgagtgtgaatttttcctcttgtattttgtacttatgtgaaaatttatgcacaagaagttaatgtt 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  37128139 tttatagcattagttctttgtggaataaatcaaacgagtgtgaatttttcctcttgtattttgtacttatgtgaaaatttatgcacaagaagtt------ 37128232  T
Q  148 tctttgagtcaatgattgcattttgtttaattaaataggaaattgattagctcgataccgttgtttattcaggccgaatcattgtcttgaagaaaataac 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  37128233 tctttgagtcaatgattgcattttgtttaattaaataggaaattgcttagctcgataccgtcgtttattcaggccgaatcattgccttgaagaaaataac 37128332  T
Q  248 atannnnnnnncaaagaaattacacgatggtttgaaaaagacagagaaggatgagggtttatttatgggtattgctatctggtgcttctgaagcactctt 347  Q
    ||         ||||||||||||||| |||||||||||||| ||||  ||||||| ||||||      |||||| || |  |||||||| ||||||||||    
T  37128333 at-ttttttttcaaagaaattacacggtggtttgaaaaagatagagggggatgagagtttat------gtattggtaacgagtgcttctaaagcactctt 37128425  T
Q  348 taaacattcttattaaaaagtttcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcac 447  Q
    |||||||| |||||||| ||| |||||||| |||||| | ||||| |||||        ||||||  ||||||| ||||  ||  ||||||||  | |||    
T  37128426 taaacatttttattaaacagtctcataagttctagtttatctgattaaaat--------tgttaggccggacgttttgattggaattcgaactccatcac 37128517  T
Q  448 ctccactttatgtgtgtgagtttacgatggctttgtcatttcttctatgtnnnnnnnnn-----cattcttattaaagaaactattctttctaaaaagta 542  Q
    ||| | ||| |||||||||||||| ||| ||||||||||||||||||| |              ||||||||||||||||| |||||||| |||| ||||    
T  37128518 ctctattttttgtgtgtgagtttatgatagctttgtcatttcttctatataccaaaaaaaaaaacattcttattaaagaaattattctttataaagagta 37128617  T
Q  543 agactttaattttcaatataataaatgtacaaactttcataaaatattttcactttaggtgtttaaatgcactcggttacatttcacttttatttatttg 642  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||    
T  37128618 agactttaattttcaatgtaataaatgtataaactttcataaaatattttcacttttggtgtttaaatgcacttgtttacatttcacttttatttatttg 37128717  T
Q  643 tgaaaattaaggttatagtctcaatcatgtacaagaaagaaatnnnnnnnntatagtctcaatcannnnnnnaaattgctcttcatgcttgtgttttttg 742  Q
    |||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||       ||||||||||||||||||||||||||||    
T  37128718 tgaaaattaaggttatagtctcaatcatgtacaagaaagaaataaaaaaa-tatagtctcaatcatttttgaaaattgctcttcatgcttgtgttttttg 37128816  T
Q  743 aacagtagtcatttcacaatcacatataggcagcctctatttacaattggcataccaaattgtagatagacacgatagataaaacacaatcactacaatc 842  Q
    |||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37128817 aacagtagtcatttcacaatcacatatag----cctctatttacaattggcataccaaattgtagatagacacgatagataaaacaaaatcactacaatc 37128912  T
Q  843 ataacaaattgataagaacatggatccctctctcttcatttc 884  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37128913 ataacaaattgataagaacatggatccctctctcttcatttc 37128954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 731 - 801
Target Start/End: Complemental strand, 20852775 - 20852705
Alignment:
Q  731 ttgtgttttttgaacagtagtcatttcacaatcacatataggcagcctctatttacaattggcataccaaa 801  Q
    ||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||| ||||||    
T  20852775 ttgtgttttttgaacagtagtcacttcacaatcacatatatttagcctctatttacaattggcagaccaaa 20852705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 516 - 609
Target Start/End: Complemental strand, 25299128 - 25299034
Alignment:
Q  516 taaagaaactattctttctaaaaagtaa-gactttaattttcaatataataaatgtacaaactttcataaaatattttcactttaggtgtttaaa 609  Q
    |||||||| ||||||||  ||||||||| || || ||||||||||  |||||||| ||||||||||||||||| || | ||||||||||||||||    
T  25299128 taaagaaattattctttaaaaaaagtaaagatttcaattttcaatgcaataaatgcacaaactttcataaaatcttattactttaggtgtttaaa 25299034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 370 - 440
Target Start/End: Original strand, 54923486 - 54923556
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaact 440  Q
    ||||||||||||  ||||||| |||||||||| |||||||||| ||||||||| ||| |||||||||||||    
T  54923486 tcataagtcctaactcaactggtaaaaatgtcgaaattgttaggtcggacgtcatgaccggggttcgaact 54923556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 40559679 - 40559798
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||| ||||||||||||| || | |||||||||| ||||| | ||||| |||||||||||||     ||||||||||  ||||||||||||||      
T  40559679 aagtcctagctcaactgataaaa-tgccgaaattgttaggtcggatgccttgatcggggttcgaactccgatacctccacttg-tgtgtgtgagtttata 40559776  T
Q  474 atggctttgtcatttcttctat 495  Q
    |||||||||||||||| |||||    
T  40559777 atggctttgtcatttcgtctat 40559798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 370 - 471
Target Start/End: Complemental strand, 47665338 - 47665237
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    |||||| |||||  ||||| || ||||||||| ||||||||||  ||||| |||||| ||||||| |||||  |  ||||||||||||||||||||||||    
T  47665338 tcataactcctaactcaaccgacaaaaatgtcgaaattgttaggccggacatcttgatcggggtttgaactccaatacctccactttatgtgtgtgagtt 47665239  T
Q  470 ta 471  Q
    ||    
T  47665238 ta 47665237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 445 - 497
Target Start/End: Complemental strand, 48489482 - 48489430
Alignment:
Q  445 cacctccactttatgtgtgtgagtttacgatggctttgtcatttcttctatgt 497  Q
    |||||||||| |||||||||||||||| |||| ||||||||||||||||||||    
T  48489482 cacctccactctatgtgtgtgagtttatgatgactttgtcatttcttctatgt 48489430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 371 - 485
Target Start/End: Original strand, 10661985 - 10662098
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttt 470  Q
    |||||||| |||||||||||| ||||||| | |||||||||| | ||||||| ||  ||||||||||||   |  |||||||||||| ||||||||||||    
T  10661985 cataagtcatagttcaactgacaaaaatgccgaaattgttaggttggacgtcatggtcggggttcgaacccga-tacctccactttacgtgtgtgagttt 10662083  T
Q  471 acgatggctttgtca 485  Q
    | |||  ||||||||    
T  10662084 atgataactttgtca 10662098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 37120258 - 37120316
Alignment:
Q  19 gcttgagtaagtactcataca-tttacgtatttatag-cattagttctttgtggaataa 75  Q
    |||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||    
T  37120258 gcttgagtaagtactcatgcaatttacgtatttataggcattagttctttgtggaataa 37120316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 403 - 497
Target Start/End: Complemental strand, 44062270 - 44062176
Alignment:
Q  403 aaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttctatgt 497  Q
    |||||||||| ||||||||||||| ||||||||||||   ||| |||||| ||| ||||| ||| ||||  ||| |||||||||||||| |||||    
T  44062270 aaattgttaggtcggacgtcttgaccggggttcgaaccccagctcctccattttgtgtgtatgaatttataatgactttgtcatttcttatatgt 44062176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 369 - 495
Target Start/End: Original strand, 48191094 - 48191218
Alignment:
Q  369 ttcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagt 468  Q
    |||| ||||||||| ||||||| ||||| || | ||||||||||  |||| ||| ||| |||||||||||||  || |||||||| || |||||||||||    
T  48191094 ttcagaagtcctagctcaactgctaaaa-tgccgaaattgttaggccggatgtcatgaccggggttcgaactccagtacctccac-ttgtgtgtgtgagt 48191191  T
Q  469 ttacgatggctttgtcatttcttctat 495  Q
    |||  |||| ||||||||||| |||||    
T  48191192 ttataatggttttgtcatttcgtctat 48191218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 15003633 - 15003752
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    |||||||||||||||||  |||| || |||||||||||| ||||| ||| ||| ||||||||||||    | ||||||||  ||||||||||||||||      
T  15003633 aagtcctagttcaactggcaaaa-tgccaaaattgttaggtcggatgtcatgaccggggttcgaaccccggtacctccac-ctatgtgtgtgagtttata 15003730  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||||||||| |||||| |||||    
T  15003731 atggctttgccatttcgtctat 15003752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 394 - 495
Target Start/End: Complemental strand, 47410856 - 47410756
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||||| |||||||||| ||||| ||| ||| ||||||||||||  | | |||||||| || ||||||||||||||  ||||||||| |||||| |||    
T  47410856 aaaatgtcgaaattgttaggtcggatgtcatgaccggggttcgaaccctggtacctccac-ttgtgtgtgtgagtttataatggctttgccatttcgtct 47410758  T
Q  494 at 495  Q
    ||    
T  47410757 at 47410756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 384 - 495
Target Start/End: Original strand, 31812227 - 31812336
Alignment:
Q  384 tcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgt 483  Q
    ||||||| |||||||||| ||||| |||| || || ||  ||| |||||||||||||    ||||||||||||||||||||  ||||| ||||| |||||    
T  31812227 tcaactggtaaaaatgtcgaaattattaggtctgatgtaatgaccggggttcgaactccgacacctccactttatgtgtgt--gtttatgatggttttgt 31812324  T
Q  484 catttcttctat 495  Q
    ||| ||||||||    
T  31812325 catctcttctat 31812336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 370 - 421
Target Start/End: Complemental strand, 9174747 - 9174696
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgt 421  Q
    |||||| |||||| |||| ||||||||||||||||||||||||||| |||||    
T  9174747 tcataaatcctagctcaattgataaaaatgtcaaaattgttagatcagacgt 9174696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 369 - 495
Target Start/End: Complemental strand, 43904624 - 43904499
Alignment:
Q  369 ttcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagt 468  Q
    |||| |||| |||| |||||||| ||||||||| ||||||||||  |||| | | ||| |||||||| |||  | | ||||||| |||||||||||||||    
T  43904624 ttcagaagttctagctcaactgaaaaaaatgtcgaaattgttaggccggatgccatgaccggggttcaaaccctggtacctcca-tttatgtgtgtgagt 43904526  T
Q  469 ttacgatggctttgtcatttcttctat 495  Q
    |||  ||  |||||||||||| |||||    
T  43904525 ttataataactttgtcatttcgtctat 43904499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 446 - 495
Target Start/End: Complemental strand, 7131555 - 7131506
Alignment:
Q  446 acctccactttatgtgtgtgagtttacgatggctttgtcatttcttctat 495  Q
    ||||||||||| |||||||||||||| |||||||||| ||| ||||||||    
T  7131555 acctccactttgtgtgtgtgagtttatgatggctttgccatctcttctat 7131506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 587
Target Start/End: Complemental strand, 22288530 - 22288493
Alignment:
Q  550 aattttcaatataataaatgtacaaactttcataaaat 587  Q
    |||||||||||||||||||| |||||||||||||||||    
T  22288530 aattttcaatataataaatgcacaaactttcataaaat 22288493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 476
Target Start/End: Original strand, 33095979 - 33096084
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttt 470  Q
    |||||||||||  |||||||  ||||||| | ||||||||||  || ||||| |||  ||||||| ||||    |||||||||||| |||||||||||||    
T  33095979 cataagtcctaactcaactggcaaaaatgacgaaattgttaggccgaacgtcatgattggggttcaaactccgacacctccactttgtgtgtgtgagttt 33096078  T
Q  471 acgatg 476  Q
    ||||||    
T  33096079 acgatg 33096084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 44658856 - 44658816
Alignment:
Q  367 gtttcataagtcctagttcaactgataaaaatgtcaaaatt 407  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  44658856 gtttcataagtcatagttcaaccgataaaaatgtcaaaatt 44658816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 374 - 412
Target Start/End: Complemental strand, 10071640 - 10071602
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttag 412  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  10071640 aagtcctagctcaactgacaaaaatgtcaaaattgttag 10071602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 394 - 495
Target Start/End: Original strand, 41464688 - 41464790
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactt-tatgtgtgtgagtttacgatggctttgtcatttcttc 492  Q
    |||||| | |||||||||| ||||| | | ||| ||||||||||||   || |||||||||| | ||||||||||||||  ||||||||| |||||| ||    
T  41464688 aaaatgccgaaattgttaggtcggatgccatgaccggggttcgaaccccagtacctccacttgtgtgtgtgtgagtttataatggctttgccatttcgtc 41464787  T
Q  493 tat 495  Q
    |||    
T  41464788 tat 41464790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 367 - 440
Target Start/End: Original strand, 2861049 - 2861122
Alignment:
Q  367 gtttcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaact 440  Q
    |||||||||||||||  |||||| |  |||||||| |||||||||| ||||||||| ||| ||  |||||||||    
T  2861049 gtttcataagtcctaactcaactaacgaaaatgtcgaaattgttaggtcggacgtcatgaccgaagttcgaact 2861122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 471
Target Start/End: Original strand, 4659538 - 4659639
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    ||||||||| ||| |||||||| |||||||   |||||  |||  |||| ||||||| ||| ||||||||  |   ||||||||||||||||||||||||    
T  4659538 tcataagtcatagctcaactgacaaaaatgctgaaattaataggccggatgtcttgatcggtgttcgaaccctgatacctccactttatgtgtgtgagtt 4659637  T
Q  470 ta 471  Q
    ||    
T  4659638 ta 4659639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 587
Target Start/End: Complemental strand, 22288824 - 22288779
Alignment:
Q  542 aagactttaattttcaatataataaatgtacaaactttcataaaat 587  Q
    |||| ||||||||| ||||||||||||| ||||| |||||||||||    
T  22288824 aagattttaatttttaatataataaatgcacaaattttcataaaat 22288779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 495
Target Start/End: Complemental strand, 28171103 - 28170983
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||| |||||||  ||||||| | ||||||||||  |||| | | ||| ||||||||||||    ||||||| ||||  ||||||||||||||      
T  28171103 aagtcctagctcaactggcaaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggcacctctacttg-tgtgtgtgagtttata 28171005  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||||||||| |||||| |||||    
T  28171004 atggctttgccatttcgtctat 28170983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 495
Target Start/End: Original strand, 50735883 - 50735932
Alignment:
Q  446 acctccactttatgtgtgtgagtttacgatggctttgtcatttcttctat 495  Q
    ||||||| ||||||||||| ||||||||||| ||||||||| || |||||    
T  50735883 acctccattttatgtgtgtaagtttacgatgactttgtcatctcgtctat 50735932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 495
Target Start/End: Complemental strand, 50776972 - 50776923
Alignment:
Q  446 acctccactttatgtgtgtgagtttacgatggctttgtcatttcttctat 495  Q
    ||||||| ||||||||||| ||||||||||| ||||||||| || |||||    
T  50776972 acctccattttatgtgtgtaagtttacgatgactttgtcatctcgtctat 50776923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 1e-25; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 370 - 497
Target Start/End: Original strand, 40216779 - 40216907
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtc-aaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagt 468  Q
    ||||||||||||| |||||||  ||||||| | |||||||||||  |||| ||||||| |||||||||||   | ||||||||||||| |||||||||||    
T  40216779 tcataagtcctagctcaactggcaaaaatgccgaaaattgttaggccggatgtcttgatcggggttcgaatcctggcacctccactttgtgtgtgtgagt 40216878  T
Q  469 ttacgatggctttgtcatttcttctatgt 497  Q
    ||| ||||||||||||||||||| |||||    
T  40216879 ttatgatggctttgtcatttcttttatgt 40216907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 366 - 497
Target Start/End: Complemental strand, 28183843 - 28183712
Alignment:
Q  366 agtttcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtg 465  Q
    ||||||||||||| ||| |||||||| ||||||| | ||||| ||||  ||||  |||||| ||||||||||||     |||||||||||| ||||||||    
T  28183843 agtttcataagtcttagctcaactgacaaaaatgccgaaattattaggccggatttcttgaccggggttcgaaccccgacacctccactttgtgtgtgtg 28183744  T
Q  466 agtttacgatggctttgtcatttcttctatgt 497  Q
    ||||||  |||||||| |||||||||||||||    
T  28183743 agtttataatggctttatcatttcttctatgt 28183712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 372 - 495
Target Start/End: Original strand, 5917284 - 5917406
Alignment:
Q  372 ataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttta 471  Q
    |||||||||||||||||||| ||||||||| ||| ||||||  |||| ||| ||| | |||||||||| || | ||||||| ||| ||||||||||||||    
T  5917284 ataagtcctagttcaactgacaaaaatgtcgaaactgttaggccggatgtcatgaccagggttcgaaccatggtacctcca-tttgtgtgtgtgagttta 5917382  T
Q  472 cgatggctttgtcatttcttctat 495  Q
      ||| |||||||||||| |||||    
T  5917383 taatgactttgtcatttcgtctat 5917406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 371 - 482
Target Start/End: Complemental strand, 39709751 - 39709640
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttt 470  Q
    ||||||| |||| ||||||| |||||||||| ||||||||||| |||||||| |||  ||||||| |||| |   ||||||||||||| |||||||||||    
T  39709751 cataagttctagctcaactgctaaaaatgtcgaaattgttagaccggacgtcgtgactggggttcaaactctgatacctccactttatatgtgtgagttt 39709652  T
Q  471 acgatggctttg 482  Q
    | ||||| ||||    
T  39709651 atgatggttttg 39709640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 371 - 486
Target Start/End: Complemental strand, 40326607 - 40326492
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttt 470  Q
    |||||||||||||| || || ||||||||| |||||||||||  |||||||| ||| ||||||| ||||  ||| |  || ||||| |||||||||||||    
T  40326607 cataagtcctagttgaattggtaaaaatgtgaaaattgttaggccggacgtcatgatcggggtttgaaccctagtatttctactttgtgtgtgtgagttt 40326508  T
Q  471 acgatggctttgtcat 486  Q
    | ||| ||||||||||    
T  40326507 atgatagctttgtcat 40326492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 372 - 497
Target Start/End: Complemental strand, 11637678 - 11637555
Alignment:
Q  372 ataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttta 471  Q
    ||||||||||| |||||||  ||||||||| ||||||||||  |  |||| |||| |||| |||||||   || |||||||||||  ||||| |||||||    
T  11637678 ataagtcctagctcaactggaaaaaatgtcgaaattgttaggccaaacgttttgatcgggattcgaaccccagtacctccacttt--gtgtgcgagttta 11637581  T
Q  472 cgatggctttgtcatttcttctatgt 497  Q
     ||||| |||||||||||||||||||    
T  11637580 tgatggttttgtcatttcttctatgt 11637555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 542 - 599
Target Start/End: Complemental strand, 35139087 - 35139030
Alignment:
Q  542 aagactttaattttcaatataataaatgtacaaactttcataaaatattttcacttta 599  Q
    ||||||| ||||||||||  |||||||| |||||||||||||||||||||||||||||    
T  35139087 aagacttcaattttcaatgcaataaatgcacaaactttcataaaatattttcacttta 35139030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 393 - 497
Target Start/End: Complemental strand, 14344754 - 14344650
Alignment:
Q  393 aaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttc 492  Q
    |||||| ||||||||||||   ||||||||||||  |||||||||||     |||||||||||| |||||||||||||| |||||||||   ||||||||    
T  14344754 aaaaatatcaaaattgttaagccggacgtcttgattggggttcgaacaccgtcacctccactttgtgtgtgtgagtttatgatggctttacaatttcttc 14344655  T
Q  493 tatgt 497  Q
    |||||    
T  14344654 tatgt 14344650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 372 - 467
Target Start/End: Complemental strand, 41323761 - 41323666
Alignment:
Q  372 ataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgag 467  Q
    ||||||| ||| |||||| |||||||||| |||||||||||  |||||||| ||| ||||||||||||| |   ||| || |||||||||||||||    
T  41323761 ataagtcttagctcaactcataaaaatgttaaaattgttaggccggacgtcgtgatcggggttcgaactctgataccgccgctttatgtgtgtgag 41323666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 370 - 495
Target Start/End: Original strand, 1522693 - 1522817
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    ||||||||||||| |||||||  ||||||  | ||||||||||  ||||| || ||| ||||||||||||      |||||||||||| ||||||||| |    
T  1522693 tcataagtcctagctcaactggcaaaaataccgaaattgttaggccggacttcatgatcggggttcgaacctccatacctccactttacgtgtgtgag-t 1522791  T
Q  470 tacgatggctttgtcatttcttctat 495  Q
    ||||||||||||| ||| ||||||||    
T  1522792 tacgatggctttgccatctcttctat 1522817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 446 - 495
Target Start/End: Complemental strand, 24197880 - 24197831
Alignment:
Q  446 acctccactttatgtgtgtgagtttacgatggctttgtcatttcttctat 495  Q
    |||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  24197880 acctccactttatgtgtgtgagtttatgatggttttgtcatctcttctat 24197831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 370 - 495
Target Start/End: Original strand, 31291219 - 31291344
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    |||||| |||||| | |||||| ||||||| | ||||||||||  || ||||| ||| ||||||||||||| | | |||| || ||| ||| ||||||||    
T  31291219 tcataaatcctagcttaactgacaaaaatgccgaaattgttaggccgaacgtcatgatcggggttcgaactttggtaccttcattttgtgtttgtgagtt 31291318  T
Q  470 tacgatggctttgtcatttcttctat 495  Q
    || ||||| |||||||| || |||||    
T  31291319 tatgatggttttgtcatctcgtctat 31291344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 40344495 - 40344613
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||||||||||| | |||||| | ||||||||||  |||| ||| ||||||||||||||||  | | |||||||||| |||||||||||||||      
T  40344495 aagtcctagttcaactg-tcaaaatgccgaaattgttagc-cggatgtcatgaacggggttcgaaccctggtacctccactt-atgtgtgtgagtttata 40344591  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||| ||||| |||||| |||||    
T  40344592 atgactttgccatttcgtctat 40344613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 365 - 412
Target Start/End: Original strand, 12320982 - 12321029
Alignment:
Q  365 aagtttcataagtcctagttcaactgataaaaatgtcaaaattgttag 412  Q
    |||| ||||||||||||| |||||||| ||||||||||||||||||||    
T  12320982 aagtctcataagtcctagctcaactgacaaaaatgtcaaaattgttag 12321029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 372 - 495
Target Start/End: Original strand, 32778500 - 32778623
Alignment:
Q  372 ataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttta 471  Q
    ||||||||||| | || ||  ||||||||||||||| |||  ||| ||||| ||| ||||||| |||||     ||||||||||| |||||||| |||||    
T  32778500 ataagtcctagcttaagtggcaaaaatgtcaaaattattaagtcgtacgtcatgatcggggtttgaactccgatacctccactttgtgtgtgtgggttta 32778599  T
Q  472 cgatggctttgtcatttcttctat 495  Q
     |||||||||||||| || |||||    
T  32778600 tgatggctttgtcatctcgtctat 32778623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 370 - 471
Target Start/End: Original strand, 18641433 - 18641535
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggg-gttcgaactatagcacctccactttatgtgtgtgagt 468  Q
    |||||||| |||||| ||| |  ||||||||||||||| ||||  |||||||| |||  ||| ||||||||  ||| ||||||||||||||||||| |||    
T  18641433 tcataagttctagtttaaccggcaaaaatgtcaaaattattaggccggacgtcatgattgggagttcgaaccctagtacctccactttatgtgtgttagt 18641532  T
Q  469 tta 471  Q
    |||    
T  18641533 tta 18641535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 588
Target Start/End: Complemental strand, 36782863 - 36782781
Alignment:
Q  507 cattcttattaaagaaactattctttctaaaaagtaa-gactttaattttcaatataataaatgtacaaactttcataaaata 588  Q
    ||||| || |||| ||| ||||||||  ||||| ||| ||||| ||||||||||| |||||||| ||||||||||||||||||    
T  36782863 cattcctaataaataaattattctttaaaaaaattaatgacttcaattttcaatacaataaatgcacaaactttcataaaata 36782781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 471
Target Start/End: Original strand, 10006170 - 10006246
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttta 471  Q
    |||||||||||||||||||| |||| ||| ||| ||||||||||||   || |||| ||| |||||||||||||||||    
T  10006170 aaaatgtcaaaattgttagaccggatgtcatgatcggggttcgaaccccagtaccttcac-ttatgtgtgtgagttta 10006246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 25063344 - 25063464
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    |||||||||||||||||  ||||||| | ||||||||||  |||| | | ||| ||||||||||||    | |||||||| || ||||||||||||||      
T  25063344 aagtcctagttcaactggcaaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctccac-ttgtgtgtgtgagtttata 25063442  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||||||||| |||||| |||||    
T  25063443 atggctttgccatttcgtctat 25063464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 446 - 495
Target Start/End: Complemental strand, 37820946 - 37820897
Alignment:
Q  446 acctccactttatgtgtgtgagtttacgatggctttgtcatttcttctat 495  Q
    ||||||||||| |||||||||||||| ||||| |||||||| ||||||||    
T  37820946 acctccactttgtgtgtgtgagtttatgatggttttgtcatctcttctat 37820897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 480
Target Start/End: Original strand, 11021360 - 11021447
Alignment:
Q  393 aaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctt 480  Q
    ||||||||| ||||| |||| ||||||||| ||| | | ||||||||    | ||||||||||| |||||||||||||| ||||||||    
T  11021360 aaaaatgtcgaaattattaggtcggacgtcatgacctgagttcgaaccccggtacctccactttgtgtgtgtgagtttatgatggctt 11021447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 370 - 440
Target Start/End: Complemental strand, 37821034 - 37820964
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaact 440  Q
    ||||||||||||  |||| |  ||||||||||||||||||||| | ||||||| ||| ||||||| |||||    
T  37821034 tcataagtcctaactcaattcgtaaaaatgtcaaaattgttaggttggacgtcatgatcggggtttgaact 37820964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 495
Target Start/End: Complemental strand, 19649550 - 19649502
Alignment:
Q  446 acctccactttatgtgtgtgagtttacgatggctttgtcatttcttctat 495  Q
    |||||||||| |||||||||||||||  |||||||||||||||| |||||    
T  19649550 acctccactt-atgtgtgtgagtttataatggctttgtcatttcgtctat 19649502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 495
Target Start/End: Complemental strand, 27817553 - 27817453
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||| | ||||||||||| |||| ||| ||| ||||||||||||    | ||||||||||  ||||||||||||||  ||||||||| |||||| |||    
T  27817553 aaaatgccgaaattgttagaccggatgtcatgaccggggttcgaaccccggtacctccacttg-tgtgtgtgagtttataatggctttgccatttcgtct 27817455  T
Q  494 at 495  Q
    ||    
T  27817454 at 27817453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 587
Target Start/End: Original strand, 41207766 - 41207811
Alignment:
Q  542 aagactttaattttcaatataataaatgtacaaactttcataaaat 587  Q
    ||||||||||||||||||  |||||||| |||||| ||||||||||    
T  41207766 aagactttaattttcaatgcaataaatgcacaaacattcataaaat 41207811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 495
Target Start/End: Complemental strand, 42007383 - 42007335
Alignment:
Q  446 acctccactttatgtgtgtgagtttacgatggctttgtcatttcttctat 495  Q
    |||||||||| |||||||||||||||| |||| ||||||||||| |||||    
T  42007383 acctccactt-atgtgtgtgagtttacaatggttttgtcatttcgtctat 42007335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 4e-25; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 370 - 497
Target Start/End: Original strand, 9599312 - 9599439
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    |||||| |||||| |||||||| ||||||||| ||||||||| | | |||||||||| |||||||| |||| | | ||||||||||| |||||||||| |    
T  9599312 tcataattcctagctcaactgacaaaaatgtcgaaattgttaaaccagacgtcttgatcggggttcaaactctggtacctccactttgtgtgtgtgagct 9599411  T
Q  470 tacgatggctttgtcatttcttctatgt 497  Q
    || |||| ||||| ||||||||||||||    
T  9599412 tatgatgactttgccatttcttctatgt 9599439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 374 - 497
Target Start/End: Complemental strand, 22792234 - 22792111
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||| |||||||  ||||||| | |||||||||| |||||||||||||  |||||||||||     |||||||||||| |||||||||||||| |    
T  22792234 aagtcctagctcaactggcaaaaatgccgaaattgttaggtcggacgtcttgacaggggttcgaaccccgacacctccactttgtgtgtgtgagtttatg 22792135  T
Q  474 atggctttgtcatttcttctatgt 497  Q
    |||  |||| ||||||||||||||    
T  22792134 atgattttgccatttcttctatgt 22792111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 731 - 801
Target Start/End: Complemental strand, 41000436 - 41000366
Alignment:
Q  731 ttgtgttttttgaacagtagtcatttcacaatcacatataggcagcctctatttacaattggcataccaaa 801  Q
    ||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||| ||||||    
T  41000436 ttgtgttttttgaacagtagtcacttcacaatcacatatatttagcctctatttacaattggcagaccaaa 41000366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 371 - 495
Target Start/End: Original strand, 30527983 - 30528107
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttt 470  Q
    |||||||||||| ||||| | | |||||| | ||||||||||  ||||| || ||| || | |||||||    ||||||||||||| |||||||||||||    
T  30527983 cataagtcctagctcaaccggtgaaaatgccgaaattgttaggccggacatcatgatcgagattcgaaccccggcacctccactttgtgtgtgtgagttt 30528082  T
Q  471 acgatggctttgtcatttcttctat 495  Q
    |||||||||||  ||||||||||||    
T  30528083 acgatggctttaccatttcttctat 30528107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 371 - 495
Target Start/End: Original strand, 30568323 - 30568447
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttt 470  Q
    |||||||||||| ||||| | | |||||| | ||||||||||  ||||| || ||| || | |||||||    ||||||||||||| |||||||||||||    
T  30568323 cataagtcctagctcaaccggtgaaaatgccgaaattgttaggccggacatcatgatcgagattcgaaccccggcacctccactttgtgtgtgtgagttt 30568422  T
Q  471 acgatggctttgtcatttcttctat 495  Q
    |||||||||||  ||||||||||||    
T  30568423 acgatggctttaccatttcttctat 30568447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 371 - 482
Target Start/End: Original strand, 11408374 - 11408485
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttt 470  Q
    |||||||||||| ||||||   |||||||||||||||||||||||| ||||| | | ||| |||||||    || |||| |||||| |||||||||||||    
T  11408374 cataagtcctagctcaactagcaaaaatgtcaaaattgttagatcgaacgtcataatcggagttcgaatcccagtaccttcactttgtgtgtgtgagttt 11408473  T
Q  471 acgatggctttg 482  Q
    | ||||| ||||    
T  11408474 atgatggttttg 11408485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 372 - 495
Target Start/End: Complemental strand, 42645590 - 42645467
Alignment:
Q  372 ataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactt-tatgtgtgtgagttt 470  Q
    ||||||||||| ||||||| ||||| ||  |||||| |||||||||| ||| ||| ||||||||||||    | |||||||||| | | |||||||||||    
T  42645590 ataagtcctagctcaactggtaaaa-tgctaaaattattagatcggatgtcatgatcggggttcgaacctcggtacctccacttatgtatgtgtgagttt 42645492  T
Q  471 acgatggctttgtcatttcttctat 495  Q
    |  |||||||||||||||| |||||    
T  42645491 ataatggctttgtcatttcgtctat 42645467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 370 - 493
Target Start/End: Original strand, 26526513 - 26526636
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    ||||||||| ||| |||||||  ||||||  | ||||||||||  || ||||| ||| || ||||||||||   | ||||||||||||||||||||||||    
T  26526513 tcataagtcttagctcaactggcaaaaataccgaaattgttaggccgaacgtcatgaccgaggttcgaactccggtacctccactttatgtgtgtgagtt 26526612  T
Q  470 tacgatggctttgtcatttcttct 493  Q
    || ||||  |||| ||| ||||||    
T  26526613 tatgatgaatttgccatctcttct 26526636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 495
Target Start/End: Complemental strand, 972718 - 972598
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    |||||||||||||||||| ||||||||| |||||||||| ||||| |   ||| | ||||||||||    | ||||| || || ||||||||||||||      
T  972718 aagtcctagttcaactgacaaaaatgtcgaaattgttaggtcggatgctatgaccagggttcgaaccccggtacctctac-ttgtgtgtgtgagtttata 972620  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||| |||||||||||| |||||    
T  972619 atgactttgtcatttcgtctat 972598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 542 - 591
Target Start/End: Original strand, 8143707 - 8143756
Alignment:
Q  542 aagactttaattttcaatataataaatgtacaaactttcataaaatattt 591  Q
    |||| |||||||||||||  ||||||||||||||||||||||||| ||||    
T  8143707 aagattttaattttcaatgcaataaatgtacaaactttcataaaaaattt 8143756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 33028235 - 33028354
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    |||||||||||||||||| |||| || ||||||||||||  |||| ||| ||| ||||||||||||    | || ||||| |||||||||||||||||      
T  33028235 aagtcctagttcaactgacaaaa-tgccaaaattgttaggccggatgtcatgaccggggttcgaaccccggtacttccac-ttatgtgtgtgagtttata 33028332  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||||||||  |||||| |||||    
T  33028333 atggctttaccatttcgtctat 33028354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 446 - 494
Target Start/End: Original strand, 6525915 - 6525963
Alignment:
Q  446 acctccactttatgtgtgtgagtttacgatggctttgtcatttcttcta 494  Q
    ||||||||||| |||||||||||||| |||| ||||||||| |||||||    
T  6525915 acctccactttgtgtgtgtgagtttatgatgactttgtcatctcttcta 6525963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 371 - 495
Target Start/End: Complemental strand, 42997158 - 42997034
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttt 470  Q
    |||||||||||| ||||||| ||||| |||| ||| |||||| |  |||||| ||| |||| ||| |||    ||||||| ||||| |||||||| || |    
T  42997158 cataagtcctagctcaactggtaaaactgtcgaaactgttaggttagacgtcatgatcgggattcaaacaccggcacctctactttttgtgtgtgggtat 42997059  T
Q  471 acgatggctttgtcatttcttctat 495  Q
    | |||||||||| |||||| |||||    
T  42997058 atgatggctttgacatttcatctat 42997034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 415
Target Start/End: Complemental strand, 22096811 - 22096768
Alignment:
Q  372 ataagtcctagttcaactgataaaaatgtcaaaattgttagatc 415  Q
    ||||||||||  ||||||||| ||||||||||||||||||||||    
T  22096811 ataagtcctaactcaactgattaaaatgtcaaaattgttagatc 22096768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 369 - 495
Target Start/End: Complemental strand, 10393630 - 10393506
Alignment:
Q  369 ttcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagt 468  Q
    |||| ||||||||| |||||||  ||||||| | ||||| ||||  |||| | ||||| ||||||||||||    | ||||||||||  |||||||||||    
T  10393630 ttcagaagtcctagctcaactgg-aaaaatgccgaaattattaggccggatgccttgaccggggttcgaaccccggtacctccacttg-tgtgtgtgagt 10393533  T
Q  469 ttacgatggctttgtcatttcttctat 495  Q
    |||  |||||||||||||||| |||||    
T  10393532 ttataatggctttgtcatttcgtctat 10393506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 370 - 440
Target Start/End: Complemental strand, 13542931 - 13542862
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaact 440  Q
    ||||||||||||  |||||| | |||||||||||||||||||| | ||||||| || || |||||||||||    
T  13542931 tcataagtcctaactcaacttaaaaaaatgtcaaaattgttaggttggacgtcatg-accgggttcgaact 13542862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 495
Target Start/End: Complemental strand, 1269642 - 1269523
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||| |||||||| |||| |||| ||||||||||  |||| | | |||  |||||||||||    | |||||||||| || |||||||||||| |    
T  1269642 aagtcctagctcaactgacaaaa-tgtcgaaattgttaggccggatgccatgattggggttcgaaccccggtacctccactt-atttgtgtgagtttatg 1269545  T
Q  474 atggctttgtcatttcttctat 495  Q
    || ||||||||||||| |||||    
T  1269544 atagctttgtcatttcatctat 1269523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 471
Target Start/End: Complemental strand, 2025804 - 2025709
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttta 471  Q
    ||||||||  ||||||||||||| ||   |||||||||| ||||| ||| ||| |||||||||||||   | |||||||| |||||||||||||||||    
T  2025804 aagtcctaactcaactgataaaa-tgcggaaattgttaggtcggatgtcatgatcggggttcgaactccggtacctccac-ttatgtgtgtgagttta 2025709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 579
Target Start/End: Complemental strand, 4878612 - 4878575
Alignment:
Q  542 aagactttaattttcaatataataaatgtacaaacttt 579  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  4878612 aagacttcaattttcaatataataaatgtagaaacttt 4878575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 482
Target Start/End: Complemental strand, 10084034 - 10083945
Alignment:
Q  393 aaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttg 482  Q
    ||||||||| ||||| |||  ||||||||| ||| |||||||||||||   | | ||||||||| ||||||| |||||| |||| |||||    
T  10084034 aaaaatgtcgaaattattaagtcggacgtcatgaccggggttcgaactccggtagctccactttgtgtgtgtaagtttatgatgactttg 10083945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 16496605 - 16496724
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    |||||||||||||||||  |||| |||| ||||||||||  |||| | | ||| ||||||||||||    | ||||||||||  ||||||||||||||      
T  16496605 aagtcctagttcaactggcaaaa-tgtcgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctccacttg-tgtgtgtgagtttata 16496702  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||||||||| |||||| |||||    
T  16496703 atggctttgccatttcgtctat 16496724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 495
Target Start/End: Complemental strand, 23074768 - 23074648
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||| |||||||  ||||||| | ||||||||||  |||| | | ||| ||||||||||||    | ||||||||||  ||||||||||||||      
T  23074768 aagtcctagctcaactggcaaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctccacttg-tgtgtgtgagtttata 23074670  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||||||||| |||||| |||||    
T  23074669 atggctttgccatttcgtctat 23074648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 497
Target Start/End: Complemental strand, 23419658 - 23419609
Alignment:
Q  448 ctccactttatgtgtgtgagtttacgatggctttgtcatttcttctatgt 497  Q
    ||||||||| ||| || ||||||| |||||||||| ||||||||||||||    
T  23419658 ctccactttgtgtatgcgagtttatgatggctttgccatttcttctatgt 23419609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 29214869 - 29214910
Alignment:
Q  369 ttcataagtcctagttcaactgataaaaatgtcaaaattgtt 410  Q
    |||||||||| ||| |||| ||||||||||||||||||||||    
T  29214869 ttcataagtcatagctcaattgataaaaatgtcaaaattgtt 29214910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 495
Target Start/End: Complemental strand, 39151049 - 39150930
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||| ||||||| ||||| |||| ||||||||||  |||| | | ||| ||||||||||||    | ||||||||||  ||||||||||||||      
T  39151049 aagtcctagctcaactggtaaaa-tgtcgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctccacttg-tgtgtgtgagtttata 39150952  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||||||||| |||||| |||||    
T  39150951 atggctttgacatttcgtctat 39150930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 495
Target Start/End: Complemental strand, 42337947 - 42337847
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||| | |||||||||| ||||| ||| | | ||| ||||||||| | | ||||||||||  |||||||||||||| ||||| || |||||||| |||    
T  42337947 aaaatgccgaaattgttaggtcggatgtcataatcggagttcgaactctggtacctccacttg-tgtgtgtgagtttatgatggtttcgtcatttcatct 42337849  T
Q  494 at 495  Q
    ||    
T  42337848 at 42337847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 6e-24; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 370 - 495
Target Start/End: Original strand, 46343329 - 46343454
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    ||||||||||||| |||||||| |||| || | ||||||||||  |||||||| ||| ||||||||||||  ||| ||||||| |||| |||||||||||    
T  46343329 tcataagtcctagctcaactgacaaaagtgccgaaattgttaggccggacgtcatgaccggggttcgaaccctagtacctccattttacgtgtgtgagtt 46343428  T
Q  470 tacgatggctttgtcatttcttctat 495  Q
    || |||| ||||||||| ||||||||    
T  46343429 tatgatgactttgtcatctcttctat 46343454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 370 - 497
Target Start/End: Original strand, 13849356 - 13849483
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    ||||||||||||| |||||||| ||||||||| |||||||||| || |||||||||| ||||||||||||     |||||||||||| |||||| |||||    
T  13849356 tcataagtcctagctcaactgacaaaaatgtcgaaattgttaggtcagacgtcttgatcggggttcgaaccccgacacctccactttgtgtgtgggagtt 13849455  T
Q  470 tacgatggctttgtcatttcttctatgt 497  Q
    |   ||| ||||| ||||||||||||||    
T  13849456 tgttatgactttgccatttcttctatgt 13849483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 374 - 497
Target Start/End: Complemental strand, 24478577 - 24478454
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||| ||||||| | |||||||| ||||||||||||||||  |  ||| ||||||||||||| |   ||||||||||||| |||||| ||||| |    
T  24478577 aagtcctagctcaactgtttaaaatgtcgaaattgttagatcggatattatgatcggggttcgaactctgatacctccactttatatgtgtgggtttatg 24478478  T
Q  474 atggctttgtcatttcttctatgt 497  Q
    |||| |||||||| || |||||||    
T  24478477 atggttttgtcatctcctctatgt 24478454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 370 - 495
Target Start/End: Complemental strand, 37340235 - 37340111
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    |||||||||||||||||||||||||||||||| ||||||||||  || ||||| ||| |  ||||||||| |  | | ||||||||| ||||||||||||    
T  37340235 tcataagtcctagttcaactgataaaaatgtcgaaattgttaggccgaacgtcatgatc-aggttcgaaccacggtatctccactttgtgtgtgtgagtt 37340137  T
Q  470 tacgatggctttgtcatttcttctat 495  Q
    || ||||  |||||||| || |||||    
T  37340136 tatgatgattttgtcatctcgtctat 37340111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 375 - 476
Target Start/End: Original strand, 46107398 - 46107499
Alignment:
Q  375 agtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacga 474  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||| ||| || | |||||||      ||||||||||||||||||||| |||| ||    
T  46107398 agtcctagttcaactgataaaaatgtcaaaattattagatcagacgtcatgatcgagattcgaaccccgatacctccactttatgtgtgtgaatttatga 46107497  T
Q  475 tg 476  Q
    ||    
T  46107498 tg 46107499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 365 - 482
Target Start/End: Original strand, 24870592 - 24870709
Alignment:
Q  365 aagtttcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgt 464  Q
    |||| ||||||||||||| |||||||  ||||||| | ||||||||||  |||||||  ||| || |||||||||    | |||||||||||| ||||||    
T  24870592 aagtctcataagtcctagctcaactggcaaaaatgccgaaattgttaggccggacgtaatgaccgaggttcgaacctcggtacctccactttacgtgtgt 24870691  T
Q  465 gagtttacgatggctttg 482  Q
    ||||||| ||||||||||    
T  24870692 gagtttatgatggctttg 24870709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 370 - 471
Target Start/End: Original strand, 28758377 - 28758478
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    |||||| ||||||||||||||  ||||||| | ||||| |||| ||||||||| ||| ||| ||||||||   || ||||||||||| ||||||||||||    
T  28758377 tcataaatcctagttcaactggcaaaaatgccgaaattattaggtcggacgtcatgaccggagttcgaaccccagtacctccactttgtgtgtgtgagtt 28758476  T
Q  470 ta 471  Q
    ||    
T  28758477 ta 28758478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 495
Target Start/End: Complemental strand, 579362 - 579246
Alignment:
Q  377 tcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatg 476  Q
    |||||| ||||||||||||| |||| ||||||||||  |||| ||| ||| ||||||||||||    | |||||||||| |||||||||||||||  |||    
T  579362 tcctagctcaactgataaaa-tgtcgaaattgttaggccggatgtcatgatcggggttcgaaccccggtacctccactt-atgtgtgtgagtttataatg 579265  T
Q  477 gctttgtcatttcttctat 495  Q
    |||||| |||||| |||||    
T  579264 gctttgccatttcgtctat 579246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 370 - 495
Target Start/End: Original strand, 37759428 - 37759554
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacgggg-ttcgaactatagcacctccactttatgtgtgtgagt 468  Q
    ||||||||| ||| |||||||  |||||||   ||||||||||| |||||||| ||| ||||| |||||||       |||||||||| |||||||||||    
T  37759428 tcataagtcatagctcaactggcaaaaatgctgaaattgttagaccggacgtcatgatcgggggttcgaacctcgattcctccactttgtgtgtgtgagt 37759527  T
Q  469 ttacgatggctttgtcatttcttctat 495  Q
    ||| |||||||||||||| ||||||||    
T  37759528 ttatgatggctttgtcatctcttctat 37759554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 372 - 495
Target Start/End: Complemental strand, 32057849 - 32057727
Alignment:
Q  372 ataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttta 471  Q
    ||||||||||| |||||||  |||| ||||||||||||||| |||||| || |||  | | |||||||    | ||||||||||| ||||||||||||||    
T  32057849 ataagtcctagctcaactggcaaaattgtcaaaattgttaggtcggacatcatgactgtgattcgaacccg-gtacctccactttgtgtgtgtgagttta 32057751  T
Q  472 cgatggctttgtcatttcttctat 495  Q
     ||||| |||||||| || |||||    
T  32057750 tgatggttttgtcatctcgtctat 32057727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 439
Target Start/End: Complemental strand, 4432015 - 4431950
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaac 439  Q
    ||||||||| |||||||  ||||||||||||||| ||||||||||||   ||| ||||||||||||    
T  4432015 aagtcctagctcaactggcaaaaatgtcaaaattattagatcggacgctatgaccggggttcgaac 4431950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 13632094 - 13632214
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||| |||||||  ||||||||| ||||||||||  |||| | | ||| || |||||||||   || ||||||||||  ||||||||||||||      
T  13632094 aagtcctagctcaactggcaaaaatgtcgaaattgttaggccggatgccatgaccgaggttcgaaccccagtacctccacttg-tgtgtgtgagtttata 13632192  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||||||||| |||||| |||||    
T  13632193 atggctttgccatttcgtctat 13632214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 542 - 587
Target Start/End: Original strand, 14964371 - 14964416
Alignment:
Q  542 aagactttaattttcaatataataaatgtacaaactttcataaaat 587  Q
    ||||||| |||||||||| ||||||||| |||||||||||||||||    
T  14964371 aagacttcaattttcaatgtaataaatgcacaaactttcataaaat 14964416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 370 - 439
Target Start/End: Complemental strand, 18427858 - 18427789
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaac 439  Q
    |||||||||||| ||||||||   ||||||||||||||||||||||||| ||| | | ||||||| ||||    
T  18427858 tcataagtcctaattcaactggcgaaaatgtcaaaattgttagatcggatgtcataatcggggtttgaac 18427789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 495
Target Start/End: Complemental strand, 51579091 - 51578971
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    |||||||| |||||| | |||||||| | |||||||||||||||||||  |||  || ||| |||||     ||||||||||||| | |||||||||| |    
T  51579091 aagtcctaattcaaccg-taaaaatgccgaaattgttagatcggacgttatgattggagtttgaactccgatacctccactttatctatgtgagtttatg 51578993  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||||||||| ||| ||||||||    
T  51578992 atggctttgccatgtcttctat 51578971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 403 - 495
Target Start/End: Original strand, 13389053 - 13389144
Alignment:
Q  403 aaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttctat 495  Q
    |||||||||| ||||| ||| ||| ||||||||||||    | |||||||||| |||||||||||||||  ||||||||| |||||| |||||    
T  13389053 aaattgttaggtcggatgtcatgaccggggttcgaaccccggtacctccactt-atgtgtgtgagtttataatggctttgccatttcgtctat 13389144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 371 - 495
Target Start/End: Complemental strand, 38944508 - 38944384
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttt 470  Q
    |||||||| ||||||||||   |||||| || |||||||||| | |||||||  || |  |||||||||   |  ||||||||||||||| |||||||||    
T  38944508 cataagtcgtagttcaactagcaaaaatatcgaaattgttaggttggacgtcaagaccctggttcgaaccccaatacctccactttatgtatgtgagttt 38944409  T
Q  471 acgatggctttgtcatttcttctat 495  Q
    | ||||| |||||||| || |||||    
T  38944408 atgatggttttgtcatctcgtctat 38944384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 447 - 495
Target Start/End: Complemental strand, 50981781 - 50981733
Alignment:
Q  447 cctccactttatgtgtgtgagtttacgatggctttgtcatttcttctat 495  Q
    |||||||||| |||||||||||||| |||||||||| ||| ||||||||    
T  50981781 cctccactttgtgtgtgtgagtttatgatggctttgacatctcttctat 50981733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 371 - 495
Target Start/End: Complemental strand, 51675793 - 51675671
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttt 470  Q
    |||||||||||| |||||| | |||| | || ||||||||||  ||||  || ||| |||||||||||||   | ||||||||||  |||||||||||||    
T  51675793 cataagtcctagctcaactaacaaaa-tatctaaattgttaggccggatatcatgaccggggttcgaactccggtacctccacttg-tgtgtgtgagttt 51675696  T
Q  471 acgatggctttgtcatttcttctat 495  Q
    |  |||||||||||||||| |||||    
T  51675695 ataatggctttgtcatttcgtctat 51675671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 374 - 421
Target Start/End: Complemental strand, 1945350 - 1945303
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgt 421  Q
    ||||||| ||||||||||||||||||||||| || |||| ||||||||    
T  1945350 aagtcctcgttcaactgataaaaatgtcaaatttcttaggtcggacgt 1945303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 428 - 495
Target Start/End: Original strand, 3037295 - 3037361
Alignment:
Q  428 cggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttctat 495  Q
    |||||||||||||   |||||||||||| |||||||||||||||  |||| ||||||||||| |||||    
T  3037295 cggggttcgaactccggcacctccactt-atgtgtgtgagtttataatggttttgtcatttcgtctat 3037361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 476
Target Start/End: Complemental strand, 9696397 - 9696314
Alignment:
Q  393 aaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatg 476  Q
    ||||||||| |||||||||| ||| ||||  ||| ||||||||||||    | ||||||||||||||||||| |||||| ||||    
T  9696397 aaaaatgtcgaaattgttaggtcgaacgttatgatcggggttcgaacctcggtacctccactttatgtgtgtaagtttatgatg 9696314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 374 - 495
Target Start/End: Complemental strand, 28187287 - 28187164
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactt---tatgtgtgtgagttt 470  Q
    ||||||||| ||||||||| |||||||| ||||||||||  |||| |   ||| |||||||||||||  || ||||||||||   | |||||||||||||    
T  28187287 aagtcctagctcaactgat-aaaatgtcgaaattgttaggccggatgctatgatcggggttcgaactccagtacctccacttatgtgtgtgtgtgagttt 28187189  T
Q  471 acgatggctttgtcatttcttctat 495  Q
    |  ||| ||||| |||||| |||||    
T  28187188 ataatgactttgccatttcgtctat 28187164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 394 - 488
Target Start/End: Original strand, 28983756 - 28983849
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcattt 488  Q
    |||||||| | |||||||| ||||| | | ||| |||||||||||||   | |||||||||| |||||||||||||||  ||| |||||||||||    
T  28983756 aaaatgtcgacattgttaggtcggatgccatgaccggggttcgaactccggtacctccactt-atgtgtgtgagtttataatgactttgtcattt 28983849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 547 - 609
Target Start/End: Original strand, 49236726 - 49236788
Alignment:
Q  547 tttaattttcaatataataaatgtacaaactttcataaaatattttcactttaggtgtttaaa 609  Q
    |||||||||||||| |||||||  ||||| ||| |||||||||| ||||||||| || |||||    
T  49236726 tttaattttcaatacaataaatacacaaatttttataaaatattatcactttagatgcttaaa 49236788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 495
Target Start/End: Complemental strand, 1052987 - 1052887
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||||| ||||||||||  |||| ||| ||| ||||||||||||  | | |||||||| || | ||||||||||||  |||||||| ||||||| |||    
T  1052987 aaaatgtcgaaattgttaggccggatgtcatgaccggggttcgaaccctggtacctccac-ttgtatgtgtgagtttataatggctttatcatttcatct 1052889  T
Q  494 at 495  Q
    ||    
T  1052888 at 1052887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 439
Target Start/End: Complemental strand, 6328974 - 6328910
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaac 439  Q
    ||||||||| |||| |||||||| || |||||||||||| || ||||||| || ||||||||||||    
T  6328974 aagtcctagctcaaatgataaaa-tgccaaaattgttaggtcagacgtctcgatcggggttcgaac 6328910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 495
Target Start/End: Original strand, 9569499 - 9569599
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||| | ||||||||||  |||| ||| ||| ||||||||||||  | | ||||||||||  ||||||||||||||  ||||||||| |||||| |||    
T  9569499 aaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccctggtacctccacttg-tgtgtgtgagtttataatggctttgccatttcgtct 9569597  T
Q  494 at 495  Q
    ||    
T  9569598 at 9569599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 16868960 - 16868912
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacg 420  Q
    |||||||||||||| |||||| |||| || ||||||||||||||||||||    
T  16868960 cataagtcctagtttaactgagaaaa-tgacaaaattgttagatcggacg 16868912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 495
Target Start/End: Original strand, 18371422 - 18371470
Alignment:
Q  446 acctccactttatgtgtgtgagtttacgatggctttgtcatttcttctat 495  Q
    |||||||||| |||||||||||||||  |||||||||||||||| |||||    
T  18371422 acctccactt-atgtgtgtgagtttataatggctttgtcatttcgtctat 18371470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 590
Target Start/End: Complemental strand, 20580163 - 20580090
Alignment:
Q  518 aagaaactattctttctaaaaagtaa-gactttaattttcaatataataaatgtacaaactttcataaaatatt 590  Q
    |||||| |||| |||  ||||||||| ||||| ||||| |||||||||||||  | ||||||||||||||||||    
T  20580163 aagaaattattatttaaaaaaagtaaagacttcaatttccaatataataaatacataaactttcataaaatatt 20580090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 495
Target Start/End: Original strand, 24712112 - 24712212
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||| | |||||||||| ||||| ||| ||| ||||||||||||    | |||||||| || ||||||||||||||  ||||||||| |||||| |||    
T  24712112 aaaatgccgaaattgttaggtcggatgtcatgaccggggttcgaaccccggtacctccac-ttgtgtgtgtgagtttataatggctttgccatttcgtct 24712210  T
Q  494 at 495  Q
    ||    
T  24712211 at 24712212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 495
Target Start/End: Complemental strand, 25586379 - 25586331
Alignment:
Q  446 acctccactttatgtgtgtgagtttacgatggctttgtcatttcttctat 495  Q
    |||||||||| |||||||||||||||  |||||||||||||||| |||||    
T  25586379 acctccactt-atgtgtgtgagtttataatggctttgtcatttcgtctat 25586331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 495
Target Start/End: Original strand, 29894434 - 29894534
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||||| ||||| |||| ||||| ||| ||| ||||||||||||  | | |||||||| || ||||||||||||||  || |||||| |||||| |||    
T  29894434 aaaatgtcgaaattattaggtcggatgtcatgaccggggttcgaaccctggtacctccac-ttgtgtgtgtgagtttataatagctttgccatttcgtct 29894532  T
Q  494 at 495  Q
    ||    
T  29894533 at 29894534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 495
Target Start/End: Complemental strand, 31263605 - 31263505
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||||| ||||| ||||| |||| | | ||| ||||||||||||    | |||||||||| |||||||||||||||  ||||||||| |||||| |||    
T  31263605 aaaatgtcgaaattattagaccggatgccatgaccggggttcgaaccccggtacctccactt-atgtgtgtgagtttataatggctttgccatttcgtct 31263507  T
Q  494 at 495  Q
    ||    
T  31263506 at 31263505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 1e-22; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 370 - 497
Target Start/End: Original strand, 3628655 - 3628785
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcgg--acgtcttgaacggggttcgaactatagcacctccac-tttatgtgtgtga 466  Q
    ||||||||||||  |||||||||||||||| | ||||||||||   ||  ||||||||| |||||||||||||   |||||||||| ||| |||||||||    
T  3628655 tcataagtcctaactcaactgataaaaatgccgaaattgttaggcgggggacgtcttgatcggggttcgaactccggcacctccacctttgtgtgtgtga 3628754  T
Q  467 gtttacgatggctttgtcatttcttctatgt 497  Q
    ||||| |||||||||||||||| ||||||||    
T  3628755 gtttatgatggctttgtcatttattctatgt 3628785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 370 - 497
Target Start/End: Original strand, 32947620 - 32947746
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    ||||||||||||| |||||||| |||||||| |||||||||||  || ||||||||| ||| ||||||||     || ||||||||||||||||||||||    
T  32947620 tcataagtcctagctcaactgacaaaaatgttaaaattgttaggccgaacgtcttgaccggagttcgaaccccgacatctccactttatgtgtgtgagtt 32947719  T
Q  470 tacgatggctttgtcatttcttctatgt 497  Q
    || ||||| |||||||||| ||||||||    
T  32947720 tatgatggttttgtcattt-ttctatgt 32947746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 370 - 495
Target Start/End: Complemental strand, 37186945 - 37186820
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    |||||||| |||| ||||||| |||||||| | |||||||||   |||||||| ||| | ||||||||||| | | ||||||||||| ||||| ||||||    
T  37186945 tcataagttctagctcaactggtaaaaatgccgaaattgttaagccggacgtcatgaccagggttcgaactctggtacctccactttgtgtgtttgagtt 37186846  T
Q  470 tacgatggctttgtcatttcttctat 495  Q
    || |||||||||||||| ||||||||    
T  37186845 tatgatggctttgtcatctcttctat 37186820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 371 - 495
Target Start/End: Complemental strand, 44836245 - 44836121
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttt 470  Q
    ||||||||||||  ||||||  |||||| ||||||||||||| ||||||||| ||| ||||||||||||    | | ||||||||||| |||||||||||    
T  44836245 cataagtcctagcacaactggcaaaaatatcaaaattgttaggtcggacgtcatgatcggggttcgaaccccggtatctccactttatatgtgtgagttt 44836146  T
Q  471 acgatggctttgtcatttcttctat 495  Q
    | |||||||||||||| || |||||    
T  44836145 atgatggctttgtcatctcatctat 44836121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 365 - 497
Target Start/End: Original strand, 27868273 - 27868405
Alignment:
Q  365 aagtttcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgt 464  Q
    |||| |||||| |||||| |||||||| ||||||  | ||||||||||  |||||||||||  |||||||| |||    | || |||||||| |||||||    
T  27868273 aagtctcataactcctagctcaactgacaaaaataccgaaattgttaggccggacgtcttggccggggttcaaacctcggtacttccactttgtgtgtgt 27868372  T
Q  465 gagtttacgatggctttgtcatttcttctatgt 497  Q
    ||||||| |||||||||| |||||||| |||||    
T  27868373 gagtttatgatggctttgccatttcttttatgt 27868405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 525 - 587
Target Start/End: Original strand, 10895339 - 10895401
Alignment:
Q  525 tattctttctaaaaagtaagactttaattttcaatataataaatgtacaaactttcataaaat 587  Q
    ||||||||  |||||||||||||||||||||||||  |||||||| |||||||||||||||||    
T  10895339 tattctttaaaaaaagtaagactttaattttcaatgcaataaatgcacaaactttcataaaat 10895401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 369 - 495
Target Start/End: Original strand, 41651073 - 41651198
Alignment:
Q  369 ttcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagt 468  Q
    |||||||||||||| ||||||| ||||| || | |||||||||| | ||||||| ||| |||||||||||     | |||| || |||||||||||||||    
T  41651073 ttcataagtcctagctcaactggtaaaa-tgccgaaattgttaggttggacgtcatgatcggggttcgaatcccggtaccttcattttatgtgtgtgagt 41651171  T
Q  469 ttacgatggctttgtcatttcttctat 495  Q
    |||  |||| ||||||||||| |||||    
T  41651172 ttataatggttttgtcatttcgtctat 41651198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 370 - 486
Target Start/End: Original strand, 236570 - 236684
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    |||| |||||||  |||||||| ||||||||| ||||||||||  |||||||| ||| ||||||||||||    | |||| |||||||  ||||||||||    
T  236570 tcatcagtcctacctcaactgacaaaaatgtcgaaattgttaggccggacgtcatgaccggggttcgaaccccggtaccttcacttta--tgtgtgagtt 236667  T
Q  470 tacgatggctttgtcat 486  Q
    || |||| |||||||||    
T  236668 tatgatgactttgtcat 236684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 370 - 491
Target Start/End: Complemental strand, 8312656 - 8312535
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    ||||||||||||||||||| || ||||||||| ||||||||||  || ||||  ||| || |||||||||    | ||||||||||| |||| |||||||    
T  8312656 tcataagtcctagttcaacggacaaaaatgtcgaaattgttaggccgaacgttatgatcgaggttcgaaccccggtacctccactttgtgtgagtgagtt 8312557  T
Q  470 tacgatggctttgtcatttctt 491  Q
    || | |||||||| ||| ||||    
T  8312556 tatggtggctttgccatctctt 8312535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 368 - 481
Target Start/End: Complemental strand, 8793305 - 8793192
Alignment:
Q  368 tttcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgag 467  Q
    |||||||| |||||| |||||||  |||||| ||||||||||||   || ||||| ||| ||||||||||||    | ||||||||||| ||||||||||    
T  8793305 tttcataaatcctagctcaactggcaaaaatatcaaaattgttaagccgtacgtcatgaccggggttcgaaccccggtacctccactttgtgtgtgtgag 8793206  T
Q  468 tttacgatggcttt 481  Q
    |||| |||| ||||    
T  8793205 tttatgatgacttt 8793192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 374 - 495
Target Start/End: Complemental strand, 23225414 - 23225294
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||| | | |||  |||||||||||    | |||||||| || ||||||||||||||      
T  23225414 aagtcctagctcaactggtaaaaatgtcaaaattgttaggtcggatgccatgacaggggttcgaaccccggtacctccac-ttgtgtgtgtgagtttata 23225316  T
Q  474 atggctttgtcatttcttctat 495  Q
    |||| |||| |||||| |||||    
T  23225315 atggttttgccatttcgtctat 23225294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 374 - 495
Target Start/End: Complemental strand, 25821073 - 25820954
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||| ||||||||||||| |||| ||||||||||  |||| | | ||| ||||||||||||  | | ||||||||||  ||||||||||||||      
T  25821073 aagtcctagctcaactgataaaa-tgtcgaaattgttaggccggatgccatgaccggggttcgaaccctggtacctccacttg-tgtgtgtgagtttata 25820976  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||||||||| |||||| |||||    
T  25820975 atggctttgccatttcgtctat 25820954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 378 - 482
Target Start/End: Complemental strand, 13979838 - 13979734
Alignment:
Q  378 cctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatgg 477  Q
    |||||||||||||| ||||||||| ||||||| |||   |||||| |||  | ||||||||    | |||||||||||| ||||||||||||||||| ||    
T  13979838 cctagttcaactgacaaaaatgtcgaaattgtcagactagacgtcatgactgaggttcgaatcccaacacctccactttgtgtgtgtgagtttacgaagg 13979739  T
Q  478 ctttg 482  Q
    |||||    
T  13979738 ctttg 13979734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 403 - 497
Target Start/End: Original strand, 40273440 - 40273531
Alignment:
Q  403 aaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttctatgt 497  Q
    ||||| ||||| |||||||||||| ||||||||| ||  | |||||| |||||| |||||||||||||| |||| |   ||||||||||||||||    
T  40273440 aaattattagaccggacgtcttgatcggggttcggacccttgcaccttcactttgtgtgtgtgagtttatgatgac---gtcatttcttctatgt 40273531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 394 - 489
Target Start/End: Original strand, 16689110 - 16689204
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttc 489  Q
    ||||| || ||||| |||| ||||||||||||| ||||||||||||   | |||||| || || ||||||||||||||  ||||||||||||||||    
T  16689110 aaaatatcgaaatttttaggtcggacgtcttgatcggggttcgaaccccaacacctcaac-ttgtgtgtgtgagtttataatggctttgtcatttc 16689204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 393 - 495
Target Start/End: Original strand, 1576397 - 1576498
Alignment:
Q  393 aaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttc 492  Q
    ||||||| |||||||||| ||||||| | | ||| |||||||||||||     |||||||||| |||||||||||||||  |||| ||||||||||| ||    
T  1576397 aaaaatgccaaaattgtttgatcggatgccatgaccggggttcgaactccgttacctccactt-atgtgtgtgagtttataatggttttgtcatttcgtc 1576495  T
Q  493 tat 495  Q
    |||    
T  1576496 tat 1576498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 5598306 - 5598425
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||| |||||||  ||||||| | |||||||||| ||||| ||| ||| ||| ||||||||    | ||||||||||  ||||||||||||||      
T  5598306 aagtcctagctcaactgg-aaaaatgccgaaattgttaggtcggatgtcatgaccggagttcgaaccccggtacctccacttg-tgtgtgtgagtttata 5598403  T
Q  474 atggctttgtcatttcttctat 495  Q
    |||||||||||||||| |||||    
T  5598404 atggctttgtcatttcgtctat 5598425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 415 - 488
Target Start/End: Complemental strand, 49479076 - 49479003
Alignment:
Q  415 cggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcattt 488  Q
    |||||||| ||| ||||||||||||| | ||||| ||||||  ||| |||||||||| |||| |||||||||||    
T  49479076 cggacgtcatgaccggggttcgaactctggcaccgccacttcgtgtttgtgagtttatgatgactttgtcattt 49479003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 403 - 495
Target Start/End: Original strand, 2112780 - 2112871
Alignment:
Q  403 aaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttctat 495  Q
    |||| ||||| ||||||||| ||| ||||||||||||    | ||||||||||  ||||||||||||||  |||||||||||||||| |||||    
T  2112780 aaatcgttaggtcggacgtcatgaccggggttcgaacccatgtacctccacttg-tgtgtgtgagtttataatggctttgtcatttcgtctat 2112871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 590
Target Start/End: Original strand, 9554085 - 9554132
Alignment:
Q  543 agactttaattttcaatataataaatgtacaaactttcataaaatatt 590  Q
    |||||| ||||||||||| | |||||| ||||||||||||||||||||    
T  9554085 agacttcaattttcaatacattaaatgcacaaactttcataaaatatt 9554132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 489
Target Start/End: Original strand, 27078572 - 27078666
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttc 489  Q
    |||||||| ||||||||||  |||| ||| ||| ||||||||||||    | |||||||||| ||||||||||||||| ||||| |||| ||||||    
T  27078572 aaaatgtcgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctccactt-atgtgtgtgagtttatgatggttttgccatttc 27078666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 380 - 411
Target Start/End: Original strand, 50363349 - 50363380
Alignment:
Q  380 tagttcaactgataaaaatgtcaaaattgtta 411  Q
    ||||||||||||||||||||||||||||||||    
T  50363349 tagttcaactgataaaaatgtcaaaattgtta 50363380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 481
Target Start/End: Original strand, 12502733 - 12502811
Alignment:
Q  403 aaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggcttt 481  Q
    ||||||||||  |||||||| |||  ||||||||||||   | ||||| ||||| |||||||||||||| |||||||||    
T  12502733 aaattgttaggccggacgtcatgattggggttcgaactccggtacctcaactttgtgtgtgtgagtttatgatggcttt 12502811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 43841904 - 43841858
Alignment:
Q  372 ataagtcctagttcaactgataaaaatgtcaaaattgttagatcgga 418  Q
    ||||||||||  |||||||||||||||||| |||||||||| |||||    
T  43841904 ataagtcctaactcaactgataaaaatgtcgaaattgttaggtcgga 43841858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 439
Target Start/End: Complemental strand, 1800732 - 1800668
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaac 439  Q
    ||||||||| ||||||||||||| ||| |||||||||||| |||||||| |||  || ||||||||    
T  1800732 aagtcctagctcaactgataaaa-tgttaaaattgttagaccggacgtcgtgactggtgttcgaac 1800668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 413
Target Start/End: Original strand, 8785094 - 8785123
Alignment:
Q  384 tcaactgataaaaatgtcaaaattgttaga 413  Q
    ||||||||||||||||||||||||||||||    
T  8785094 tcaactgataaaaatgtcaaaattgttaga 8785123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 12282620 - 12282738
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||||||||||||| ||| |||| ||||||||||   ||| | | ||| |||||||||||||   | |||||||| |||||||||| ||||||      
T  12282620 aagtcctagttcaactgat-aaagtgtcgaaattgttaggctggatgccatgaccggggttcgaact-cggtacctccac-ttatgtgtgtaagtttata 12282716  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||||||||| |||||| |||||    
T  12282717 atggctttgccatttcgtctat 12282738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 439
Target Start/End: Complemental strand, 17540204 - 17540135
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaac 439  Q
    ||||||||||||| ||||||  |||||||| | ||||||||||  | |||||| ||| ||||||||||||    
T  17540204 tcataagtcctagctcaactagtaaaaatgccgaaattgttaggccagacgtcatgaccggggttcgaac 17540135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 439
Target Start/End: Complemental strand, 29510755 - 29510710
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaac 439  Q
    |||||| |||||||||||||||||| ||| ||| ||||||||||||    
T  29510755 aaaatgccaaaattgttagatcggatgtcatgaccggggttcgaac 29510710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 33225590 - 33225541
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggac 419  Q
    ||||||||||||||| || || |||||||||| |||||||||| ||||||    
T  33225590 tcataagtcctagtttaattggtaaaaatgtcgaaattgttaggtcggac 33225541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 495
Target Start/End: Original strand, 35068906 - 35068999
Alignment:
Q  402 aaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttctat 495  Q
    |||||||||||  |||||||| ||| || |||||||| |  |  ||||||||||| |||||||||||||| || ||||||| ||| || |||||    
T  35068906 aaaattgttaggccggacgtcatgatcgaggttcgaattccaatacctccactttgtgtgtgtgagtttatgacggctttgccatctcgtctat 35068999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 495
Target Start/End: Original strand, 36586275 - 36586375
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||||| ||||||||||  |||| | | ||| ||||||||||||    | ||||||||||  ||||||||||||||  |||||||||||||||| |||    
T  36586275 aaaatgtcgaaattgttaggccggatgccgtgatcggggttcgaaccccggtacctccacttg-tgtgtgtgagtttataatggctttgtcatttcatct 36586373  T
Q  494 at 495  Q
    ||    
T  36586374 at 36586375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 495
Target Start/End: Original strand, 40685553 - 40685653
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||||| |||||||||| ||||| ||| ||| |||||||||||||     ||||||| ||| |||||| |||||||  ||||||||| |||||| |||    
T  40685553 aaaatgtcgaaattgttaggtcggatgtcatgaccggggttcgaactccgatacctcca-tttgtgtgtgagagtttataatggctttgccatttcgtct 40685651  T
Q  494 at 495  Q
    ||    
T  40685652 at 40685653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 495
Target Start/End: Complemental strand, 44623122 - 44623022
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    ||||| ||||||||||||   |||| ||| ||| |||||||||||||   | || ||||||| |||| ||||||||||  |||||||||||||||| |||    
T  44623122 aaaatatcaaaattgttaagccggatgtcatgatcggggttcgaacttcggtacttccactt-atgtatgtgagtttataatggctttgtcatttcgtct 44623024  T
Q  494 at 495  Q
    ||    
T  44623023 at 44623022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 495
Target Start/End: Complemental strand, 47429644 - 47429596
Alignment:
Q  446 acctccactttatgtgtgtgagtttacgatggctttgtcatttcttctat 495  Q
    |||||||||| |||||||||||||||  |||||||||||||||| |||||    
T  47429644 acctccactt-atgtgtgtgagtttataatggctttgtcatttcgtctat 47429596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 49632556 - 49632597
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttag 412  Q
    |||||||||||||||||||| |||||||| | ||||||||||    
T  49632556 cataagtcctagttcaactggtaaaaatgccgaaattgttag 49632597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 2e-21; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 370 - 495
Target Start/End: Complemental strand, 46021559 - 46021434
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    ||||||||||||| |||||||||||||||| | ||||||||||  |||| ||| ||| ||||||||||||    | ||||||| ||| ||||||||||||    
T  46021559 tcataagtcctagctcaactgataaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctccattttgtgtgtgtgagtt 46021460  T
Q  470 tacgatggctttgtcatttcttctat 495  Q
    || |||||||||| ||| ||||||||    
T  46021459 tatgatggctttgccatctcttctat 46021434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 371 - 495
Target Start/End: Original strand, 24333342 - 24333466
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttt 470  Q
    |||||||||||| |||||| | ||||||||| ||||||||||  ||  |||| ||| |||||||||||||  || |||||||||||||||||| ||  ||    
T  24333342 cataagtcctagctcaacttacaaaaatgtcgaaattgttaggccgagcgtcatgatcggggttcgaactccagtacctccactttatgtgtgcgaactt 24333441  T
Q  471 acgatggctttgtcatttcttctat 495  Q
    | ||||| |||||||| ||||||||    
T  24333442 atgatggttttgtcatctcttctat 24333466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 30627630 - 30627748
Alignment:
Q  376 gtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgat 475  Q
    ||||||| |||||||| ||||||||| |||||||||||||||| ||| ||| || |||||||||    | |||||||| || ||||||||||||||| ||    
T  30627630 gtcctagctcaactgacaaaaatgtcgaaattgttagatcggatgtcatgatcgaggttcgaaccccggtacctccac-ttgtgtgtgtgagtttacaat 30627728  T
Q  476 ggctttgtcatttcttctat 495  Q
    | |||||||||||| |||||    
T  30627729 gactttgtcatttcgtctat 30627748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 370 - 491
Target Start/End: Complemental strand, 6328302 - 6328181
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    ||||||||| ||| |||||||  |||||||||||||||||||| | ||||||| |||   ||||||||||      ||||||||||||||||||||||||    
T  6328302 tcataagtcttagctcaactggcaaaaatgtcaaaattgttaggttggacgtcatgactagggttcgaaccccgatacctccactttatgtgtgtgagtt 6328203  T
Q  470 tacgatggctttgtcatttctt 491  Q
    || ||||| |||||||| ||||    
T  6328202 tatgatggttttgtcatctctt 6328181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 370 - 495
Target Start/End: Complemental strand, 9506970 - 9506845
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    ||||||||||||| | |||||| |||||| |||||||||||||  ||||| || ||| || ||||||||||   | ||||||||||| ||||||||||||    
T  9506970 tcataagtcctagcttaactgacaaaaatatcaaaattgttaggccggacatcatgaccgaggttcgaactccggtacctccactttgtgtgtgtgagtt 9506871  T
Q  470 tacgatggctttgtcatttcttctat 495  Q
    || |||||| ||  ||| ||||||||    
T  9506870 tatgatggccttaccatctcttctat 9506845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 370 - 495
Target Start/End: Complemental strand, 12645426 - 12645301
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    |||||||| ||||||||||||  ||||||||| ||||||||||  |||||||  ||| || |||||||||    | |||||||||||||||||||| |||    
T  12645426 tcataagttctagttcaactgccaaaaatgtcgaaattgttaggccggacgtaatgaccgaggttcgaacccctgtacctccactttatgtgtgtgggtt 12645327  T
Q  470 tacgatggctttgtcatttcttctat 495  Q
    || ||||| |||||||| || |||||    
T  12645326 tatgatggttttgtcatctcgtctat 12645301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 367 - 495
Target Start/End: Complemental strand, 45957465 - 45957337
Alignment:
Q  367 gtttcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtga 466  Q
    |||||||||||||||| |||| ||  ||||||| ||||||||||| | |||||||| ||| | ||||||||||    | ||||||||||| ||||||| |    
T  45957465 gtttcataagtcctagctcaattggcaaaaatgccaaaattgttaaaccggacgtcatgatcagggttcgaaccccggtacctccactttgtgtgtgtta 45957366  T
Q  467 gtttacgatggctttgtcatttcttctat 495  Q
    ||||| || | ||||||||| ||||||||    
T  45957365 gtttatgaagactttgtcatctcttctat 45957337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 370 - 495
Target Start/End: Complemental strand, 41708670 - 41708547
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    |||||| |||||| ||||||||||||||||||||||||||||| ||||| ||  ||| ||||||||||||      ||||||||||  ||| ||||||||    
T  41708670 tcataaatcctagctcaactgataaaaatgtcaaaattgttaggtcggatgttatgatcggggttcgaaccccgatacctccactt--tgtatgtgagtt 41708573  T
Q  470 tacgatggctttgtcatttcttctat 495  Q
    || |||||||||  ||| ||||||||    
T  41708572 tatgatggctttaccatctcttctat 41708547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 371 - 486
Target Start/End: Original strand, 21421977 - 21422090
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttt 470  Q
    ||||| |||||||||||||| ||||||| || |||||||||||||||||||| |||  | |||| ||||  |   ||||||||||||  |||||||||||    
T  21421977 cataaatcctagttcaactggtaaaaatatcgaaattgttagatcggacgtcatgactgaggtttgaaccctgatacctccacttta--tgtgtgagttt 21422074  T
Q  471 acgatggctttgtcat 486  Q
    | ||| ||||||||||    
T  21422075 atgatagctttgtcat 21422090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 371 - 495
Target Start/End: Complemental strand, 47086427 - 47086304
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttt 470  Q
    |||||||||||| |||||||| ||||||||| ||||||||||  |||| | | ||| ||||||||||||  |   |||||||| ||||||||||||||||    
T  47086427 cataagtcctagctcaactgacaaaaatgtcgaaattgttaggccggatgccatgatcggggttcgaaccctgttacctccac-ttatgtgtgtgagttt 47086329  T
Q  471 acgatggctttgtcatttcttctat 495  Q
    |  ||||||||  |||||| |||||    
T  47086328 ataatggctttaccatttcgtctat 47086304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 394 - 494
Target Start/End: Original strand, 26794936 - 26795037
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactt-tatgtgtgtgagtttacgatggctttgtcatttcttc 492  Q
    |||||| |||||||||||||||||| | | ||| |||||||||||||   | |||||||||| ||||||||||||||||  |||| |||| |||||| ||    
T  26794936 aaaatgccaaaattgttagatcggatgccatgaccggggttcgaactccggtacctccacttatatgtgtgtgagtttataatggttttgccatttcgtc 26795035  T
Q  493 ta 494  Q
    ||    
T  26795036 ta 26795037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 559 - 609
Target Start/End: Original strand, 16180457 - 16180507
Alignment:
Q  559 tataataaatgtacaaactttcataaaatattttcactttaggtgtttaaa 609  Q
    ||||||||||| ||||||||||||||||| || |||||||| |||||||||    
T  16180457 tataataaatgcacaaactttcataaaatcttatcactttaagtgtttaaa 16180507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 370 - 439
Target Start/End: Original strand, 8059845 - 8059914
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaac 439  Q
    ||||||||||| | |||| ||  |||||||||||||||||||| |||| |||| ||| ||||||||||||    
T  8059845 tcataagtcctggctcaattggcaaaaatgtcaaaattgttaggtcgggcgtcatgatcggggttcgaac 8059914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 370 - 495
Target Start/End: Complemental strand, 12961952 - 12961827
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    ||||||||||||  ||||||  |||||||||  ||||||||||  ||||| || ||| ||| ||||||||    | |||| || ||| ||||||||||||    
T  12961952 tcataagtcctaactcaactagtaaaaatgtagaaattgttaggccggacatcatgatcggagttcgaacctcggtaccttcaatttgtgtgtgtgagtt 12961853  T
Q  470 tacgatggctttgtcatttcttctat 495  Q
    || |||| ||||||||| ||||||||    
T  12961852 tatgatgactttgtcatctcttctat 12961827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 495
Target Start/End: Original strand, 14817451 - 14817551
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||||||||||||||||  |||| | | ||| ||||||||||||  | | |||||||| || ||||| ||||||||| ||| |||||||||||| |||    
T  14817451 aaaatgtcaaaattgttaggccggatgccatgatcggggttcgaaccctggtacctccac-ttgtgtgtatgagtttacaatgactttgtcatttcgtct 14817549  T
Q  494 at 495  Q
    ||    
T  14817550 at 14817551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 495
Target Start/End: Original strand, 15264447 - 15264547
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||||||||||||||||  |||| | | ||| ||||||||||||  | | |||||||| || ||||| ||||||||| ||| |||||||||||| |||    
T  15264447 aaaatgtcaaaattgttaggccggatgccatgatcggggttcgaaccctggtacctccac-ttgtgtgtatgagtttacaatgactttgtcatttcgtct 15264545  T
Q  494 at 495  Q
    ||    
T  15264546 at 15264547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 18944929 - 18945048
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    |||||||||||||||||  |||| || | ||||||||||  ||||  || ||| ||||||||||||  | | |||||||||| |||||||||||||||      
T  18944929 aagtcctagttcaactggcaaaa-tgccgaaattgttaggccggatatcatgaccggggttcgaaccctggtacctccactt-atgtgtgtgagtttata 18945026  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||||||||| |||||| |||||    
T  18945027 atggctttgccatttcatctat 18945048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 31717302 - 31717421
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||| ||||||| ||||| || | ||||||||||  |||| | | ||| |||||||||||||   | |||||||||| |||||||||||||||      
T  31717302 aagtcctagctcaactggtaaaa-tgccgaaattgttaggccggatgccatgaccggggttcgaactccggtacctccactt-atgtgtgtgagtttata 31717399  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||||||||| |||||| |||||    
T  31717400 atggctttgccatttcgtctat 31717421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 380 - 486
Target Start/End: Complemental strand, 37938184 - 37938076
Alignment:
Q  380 tagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgt--gagtttacgatgg 477  Q
    ||||||||||| |||||||||  |||||||||| || |||||| ||| ||| |||| |||   |  |||||||||||||||||||  ||||||| ||||     
T  37938184 tagttcaactggtaaaaatgttgaaattgttaggtcagacgtcatgatcggtgttcaaacatcaatacctccactttatgtgtgtgagagtttatgatga 37938085  T
Q  478 ctttgtcat 486  Q
    |||||||||    
T  37938084 ctttgtcat 37938076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 40677022 - 40677142
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    |||||||||||||| ||  ||||||| ||||||||||||  || ||  | ||| ||||||||||||| | | ||||| || || ||||||||||||||      
T  40677022 aagtcctagttcaattggcaaaaatgccaaaattgttaggccgaacaccatgaccggggttcgaactctcgtacctctac-ttgtgtgtgtgagtttata 40677120  T
Q  474 atggctttgtcatttcttctat 495  Q
    || ||||||||||||| |||||    
T  40677121 atagctttgtcatttcgtctat 40677142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 371 - 482
Target Start/End: Original strand, 35289847 - 35289956
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttt 470  Q
    ||||||| || | |||||||| |||||||   |||||||||| || |||||| |||  |||||||||||| | | |||||||  || |||||||||||||    
T  35289847 cataagttctggctcaactgacaaaaatgctgaaattgttaggtcagacgtcatgattggggttcgaactctggtacctcca--ttttgtgtgtgagttt 35289944  T
Q  471 acgatggctttg 482  Q
    | ||||||||||    
T  35289945 atgatggctttg 35289956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 374 - 495
Target Start/End: Complemental strand, 23789537 - 23789419
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    |||||||||||||||||  ||||||| | | ||||||||  |||| | | ||| ||||||||||||  | | ||||||||||   |||||||||||||      
T  23789537 aagtcctagttcaactggcaaaaatgccgatattgttaggccggatgccatgaccggggttcgaaccctggtacctccactt---gtgtgtgagtttata 23789441  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||||||||| |||||| |||||    
T  23789440 atggctttgccatttcgtctat 23789419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 609
Target Start/End: Original strand, 37797978 - 37798045
Alignment:
Q  542 aagactttaattttcaatataataaatgtacaaactttcataaaatattttcactttaggtgtttaaa 609  Q
    ||||||| |||||||||||||||||||| | ||| ||||||||||| ||  || |||| |||||||||    
T  37797978 aagacttcaattttcaatataataaatgcataaattttcataaaatcttaccattttaagtgtttaaa 37798045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 495
Target Start/End: Complemental strand, 39580672 - 39580552
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttt 470  Q
    |||||||| ||  ||||||| | |||||||||||||||||||  | ||||| |    |||||||||||    || ||||||||||||||||||||| |||    
T  39580672 cataagtcttaactcaactggttaaaatgtcaaaattgttaggccagacgtat----cggggttcgaatcccagtacctccactttatgtgtgtgatttt 39580577  T
Q  471 acgatggctttgtcatttcttctat 495  Q
    | ||||| |||| ||| ||||||||    
T  39580576 atgatggttttgccatctcttctat 39580552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 495
Target Start/End: Original strand, 47498021 - 47498144
Alignment:
Q  372 ataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttta 471  Q
    ||||||||||| | ||||| |||| ||||| |||||||||| || |||||| ||| | |  |||||||  ||| ||||| | ||||||||||||| ||||    
T  47498021 ataagtcctagcttaactggtaaatatgtcgaaattgttaggtcagacgtcatgatctgatttcgaaccctagtacctcaattttatgtgtgtgaattta 47498120  T
Q  472 cgatggctttgtcatttcttctat 495  Q
     ||| | |||||||| || |||||    
T  47498121 tgatagttttgtcatctcgtctat 47498144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 6344412 - 6344370
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttag 412  Q
    ||||||||||||| ||||||| |||||||||||||||| ||||    
T  6344412 tcataagtcctagctcaactggtaaaaatgtcaaaatttttag 6344370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 1869820 - 1869940
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||| |||||||  ||||||| | | ||||||||  |||| | | ||| |||||||||||||   | ||||||||||  ||||||||||||||      
T  1869820 aagtcctagctcaactggcaaaaatgccgatattgttaggccggatgccatgaccggggttcgaactccggtacctccacttg-tgtgtgtgagtttata 1869918  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||||||||| |||||| |||||    
T  1869919 atggctttgccatttcgtctat 1869940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 495
Target Start/End: Complemental strand, 3861440 - 3861340
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||||| ||||||||||  |||| ||| ||| ||||||||||||    | ||||||||||  ||||||||||||||  ||||||||| |||||| |||    
T  3861440 aaaatgtcgaaattgttaggccggatgtcatgatcggggttcgaaccccggtacctccacttg-tgtgtgtgagtttataatggctttgccatttcgtct 3861342  T
Q  494 at 495  Q
    ||    
T  3861341 at 3861340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 10166875 - 10166993
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||| ||||||||||||| || | ||||||||||  |||| | | ||| |||| |||||||| | | ||||||||||  ||| ||||||||||      
T  10166875 aagtcctagctcaactgataaaa-tgccgaaattgttaggccggatgccatgaccggg-ttcgaactctggtacctccacttg-tgtatgtgagtttata 10166971  T
Q  474 atggctttgtcatttcttctat 495  Q
    |||||||||||||||| |||||    
T  10166972 atggctttgtcatttcgtctat 10166993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 495
Target Start/End: Complemental strand, 24829168 - 24829069
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||||| |||||||||| ||||| | | ||| |||||||||||||  || | || ||||| |||||||||||||||| ||| || ||||||||| |||    
T  24829168 aaaatgtcgaaattgttaggtcggatg-catgatcggggttcgaactccagtatcttcactt-atgtgtgtgagtttacaatgactgtgtcatttcgtct 24829071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 495
Target Start/End: Complemental strand, 35157188 - 35157088
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||| | ||||||||||  |||| ||| ||| ||||||||||||    | |||||||||| |||||||||||||||  ||||||||| |||||| |||    
T  35157188 aaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctccactt-atgtgtgtgagtttataatggctttgccatttcgtct 35157090  T
Q  494 at 495  Q
    ||    
T  35157089 at 35157088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 40013268 - 40013388
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||| |||||||| ||||||| | ||||||||||  |||| | | ||| || |||||||||    | ||||||||||  ||||||||||||||      
T  40013268 aagtcctagctcaactgacaaaaatgccgaaattgttaggccggatgccatgaccgaggttcgaaccccggtacctccacttg-tgtgtgtgagtttata 40013366  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||||||||| |||||| |||||    
T  40013367 atggctttgccatttcgtctat 40013388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 495
Target Start/End: Complemental strand, 44136179 - 44136130
Alignment:
Q  446 acctccactttatgtgtgtgagtttacgatggctttgtcatttcttctat 495  Q
    ||||||||||| |||||||||||||| |||| |||||| ||||| |||||    
T  44136179 acctccactttgtgtgtgtgagtttaagatgactttgtaatttcgtctat 44136130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 495
Target Start/End: Original strand, 45946797 - 45946834
Alignment:
Q  458 tgtgtgtgagtttacgatggctttgtcatttcttctat 495  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  45946797 tgtgtgtgagtttacaatggctttgtcatttcgtctat 45946834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 6e-21; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 371 - 495
Target Start/End: Original strand, 22999076 - 22999200
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttt 470  Q
    |||||||||||| ||||| | |||||||| ||||||||||||  |||||||| ||| ||||||||||||     |||||||||||| |||||||||||||    
T  22999076 cataagtcctagctcaacgggtaaaaatgccaaaattgttagtccggacgtcatgaccggggttcgaaccccgacacctccactttgtgtgtgtgagttt 22999175  T
Q  471 acgatggctttgtcatttcttctat 495  Q
    | ||||| |||||||| || |||||    
T  22999176 atgatggttttgtcatctcgtctat 22999200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 373 - 482
Target Start/End: Complemental strand, 32517943 - 32517834
Alignment:
Q  373 taagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttac 472  Q
    ||||||||||||||||||||||||||||| ||||||||||   ||||||| ||| || |||||||||    | ||||||||||| ||||||||||||||     
T  32517943 taagtcctagttcaactgataaaaatgtcgaaattgttaggctggacgtcatgaccgaggttcgaaccccggtacctccactttgtgtgtgtgagtttat 32517844  T
Q  473 gatggctttg 482  Q
    |||| |||||    
T  32517843 gatgactttg 32517834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 371 - 495
Target Start/End: Original strand, 9993171 - 9993295
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttt 470  Q
    |||||||  ||| |||||||| ||||||||| |||||||||   |||||||| | | ||||||||||||   || ||||| ||||| ||  |||||||||    
T  9993171 cataagttatagctcaactgacaaaaatgtcgaaattgttaagccggacgtcataatcggggttcgaaccccagtacctcaactttgtgcatgtgagttt 9993270  T
Q  471 acgatggctttgtcatttcttctat 495  Q
    |||||| |||||||||||| |||||    
T  9993271 acgatgactttgtcatttcgtctat 9993295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 370 - 495
Target Start/End: Original strand, 13491026 - 13491151
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtt 469  Q
    ||||||||| ||| |||||||  ||||||  | |||||||||   |||||||| ||| ||||||||||||   |  ||||||||||| ||||||||||||    
T  13491026 tcataagtcatagctcaactggcaaaaataccgaaattgttatgccggacgtcatgaccggggttcgaacctcaatacctccactttgtgtgtgtgagtt 13491125  T
Q  470 tacgatggctttgtcatttcttctat 495  Q
    || | |||||||| ||| ||||||||    
T  13491126 tatggtggctttgccatctcttctat 13491151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 374 - 495
Target Start/End: Complemental strand, 23497635 - 23497516
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||||||||||| ||||| || | ||||||||||  |||| ||| ||| ||||||||||||    | ||||||||||  ||||||||||||||      
T  23497635 aagtcctagttcaactggtaaaa-tgccgaaattgttaggccggatgtcgtgaccggggttcgaaccccggtacctccacttg-tgtgtgtgagtttata 23497538  T
Q  474 atggctttgtcatttcttctat 495  Q
    |||||||||||||||| |||||    
T  23497537 atggctttgtcatttcgtctat 23497516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 37103323 - 37103391
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaac 439  Q
    |||||||||||| |||||||| ||||||||| ||||||||||| ||||| || ||| ||||||| ||||    
T  37103323 cataagtcctagctcaactgacaaaaatgtcgaaattgttagaccggacatcatgaccggggtttgaac 37103391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 422
Target Start/End: Original strand, 18677810 - 18677860
Alignment:
Q  372 ataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtc 422  Q
    |||||| | ||||||||||||||||||| ||||||||||||| ||||||||    
T  18677810 ataagttcgagttcaactgataaaaatgccaaaattgttagaccggacgtc 18677860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 476
Target Start/End: Original strand, 636965 - 637070
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttt 470  Q
    |||| ||||||||||||| | |||||||||| ||||||||||| |||||||  |||  ||||||| |||    |  |||||||||| |||||||||||||    
T  636965 catatgtcctagttcaaccggtaaaaatgtcgaaattgttagaccggacgttatgattggggttcaaacatctgttcctccactttgtgtgtgtgagttt 637064  T
Q  471 acgatg 476  Q
    | ||||    
T  637065 atgatg 637070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 495
Target Start/End: Complemental strand, 727412 - 727293
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||| |||||||| |||| || | |||||||||| ||||| | | ||| |||||||||||||   | ||||||||||  ||||||||||||||      
T  727412 aagtcctagctcaactgacaaaa-tgccgaaattgttaggtcggatgccatgatcggggttcgaactccggtacctccacttg-tgtgtgtgagtttata 727315  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||||||||| |||||| |||||    
T  727314 atggctttgccatttcgtctat 727293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 495
Target Start/End: Original strand, 10202194 - 10202294
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||||| ||||||||||  |||| |   ||| |||||||||||||  || |||||||||| || ||||||||||||  |||||||||||||||| |||    
T  10202194 aaaatgtcgaaattgttaggccggatgctatgatcggggttcgaacttcagtacctccactt-atatgtgtgagtttataatggctttgtcatttcgtct 10202292  T
Q  494 at 495  Q
    ||    
T  10202293 at 10202294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 495
Target Start/End: Original strand, 23957076 - 23957176
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||||| ||||||||||  |||| ||| ||| ||||||||||||    | |||||||||| ||||||||||||||   |||||||||||||||| |||    
T  23957076 aaaatgtcgaaattgttaggccggatgtcatgatcggggttcgaaccccggtacctccactt-atgtgtgtgagtttttaatggctttgtcatttcgtct 23957174  T
Q  494 at 495  Q
    ||    
T  23957175 at 23957176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 415 - 495
Target Start/End: Original strand, 17052602 - 17052682
Alignment:
Q  415 cggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttctat 495  Q
    |||||||| ||| |||||||| ||||   | ||||||||||| ||||||||| |||| |||||||||| ||| ||||||||    
T  17052602 cggacgtcatgaccggggttcaaactccggtacctccactttgtgtgtgtgaatttatgatggctttgccatctcttctat 17052682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 18741504 - 18741401
Alignment:
Q  392 taaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttctt 491  Q
    |||||||| | |||||||||| ||| || || ||| || ||||| ||||   | ||||||||||| |||||||||||||| |||| ||||||||| || |    
T  18741504 taaaaatgccgaaattgttaggtcgaacatcatgatcgaggttcaaactccggtacctccactttgtgtgtgtgagtttatgatgactttgtcatctcgt 18741405  T
Q  492 ctat 495  Q
    ||||    
T  18741404 ctat 18741401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 369 - 495
Target Start/End: Complemental strand, 11543928 - 11543803
Alignment:
Q  369 ttcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagt 468  Q
    |||| ||||||||| |||||||  ||||||| | |||||||||| ||||| | | ||| ||||||| ||||    | ||||||||||  |||||||||||    
T  11543928 ttcagaagtcctagctcaactggcaaaaatgccgaaattgttaggtcggatgccatgatcggggtttgaaccccggtacctccacttg-tgtgtgtgagt 11543830  T
Q  469 ttacgatggctttgtcatttcttctat 495  Q
    |||  ||||||||| |||||| |||||    
T  11543829 ttataatggctttgccatttcgtctat 11543803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 393 - 471
Target Start/End: Complemental strand, 25219741 - 25219664
Alignment:
Q  393 aaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttta 471  Q
    ||||||||| ||||||||||  |||||||| ||| |||| ||||||||   | ||||||||||||| ||||||||||||    
T  25219741 aaaaatgtcgaaattgttaggccggacgtcatga-cgggattcgaactcaggtacctccactttatatgtgtgagttta 25219664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 369 - 495
Target Start/End: Complemental strand, 43461462 - 43461338
Alignment:
Q  369 ttcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagt 468  Q
    |||| ||||||||| ||||||| ||||| |||| ||||||||||  |||| | | ||| ||||||||||||    | ||||||||||  |||||||||||    
T  43461462 ttcagaagtcctagctcaactggtaaaa-tgtcgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctccacttg-tgtgtgtgagt 43461365  T
Q  469 ttacgatggctttgtcatttcttctat 495  Q
    |||  ||| |||||||||||| |||||    
T  43461364 ttataatgactttgtcatttcgtctat 43461338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 471
Target Start/End: Complemental strand, 7907034 - 7906958
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttta 471  Q
    ||||| ||||||||||||| ||||||||| |||  |||| ||||||   ||||||||||| || ||||||||||||||    
T  7907034 aaaatttcaaaattgttaggtcggacgtcgtgactggggatcgaaccccagcacctccac-ttgtgtgtgtgagttta 7906958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 495
Target Start/End: Complemental strand, 13268079 - 13267979
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||| | |||||||||| ||||| ||| ||| ||||||||||||    | ||||||||||  ||||||||||||||  ||||||||| |||||| |||    
T  13268079 aaaatgccgaaattgttaggtcggatgtcatgaccggggttcgaaccccggtacctccacttg-tgtgtgtgagtttataatggctttgccatttcgtct 13267981  T
Q  494 at 495  Q
    ||    
T  13267980 at 13267979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 439
Target Start/End: Complemental strand, 16535066 - 16535002
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaac 439  Q
    ||||||||||||||||||| |||||||| ||||||||||  |||| ||| ||| ||| ||||||||    
T  16535066 aagtcctagttcaactgat-aaaatgtcgaaattgttaggccggatgtcatgatcggagttcgaac 16535002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 587
Target Start/End: Original strand, 36379408 - 36379445
Alignment:
Q  550 aattttcaatataataaatgtacaaactttcataaaat 587  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  36379408 aattttcaatgtaataaatgaacaaactttcataaaat 36379445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 495
Target Start/End: Original strand, 40812041 - 40812141
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||| | |||||||||| ||||| ||| ||| ||||||||||||    | |||| ||| |||||||||||||||||  ||||||||| |||||| |||    
T  40812041 aaaatgccgaaattgttaggtcggatgtcatgaccggggttcgaaccccggtaccttcac-ttatgtgtgtgagtttataatggctttgccatttcgtct 40812139  T
Q  494 at 495  Q
    ||    
T  40812140 at 40812141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 495
Target Start/End: Complemental strand, 41164748 - 41164652
Alignment:
Q  398 tgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttctat 495  Q
    |||| ||||||||||  ||||  || ||| ||||||||||||   || ||||| |||| |||||||||||||||  |||||||||||||||| |||||    
T  41164748 tgtcgaaattgttaggccggatatcatgaccggggttcgaaccccagtacctctactt-atgtgtgtgagtttataatggctttgtcatttcatctat 41164652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 44948024 - 44948143
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||| |||||||| |||| |||| ||||||||||  |||| | | ||| |||||||||||||   | ||||||||||  | ||||||||||||      
T  44948024 aagtcctagctcaactgacaaaa-tgtcgaaattgttaggccggatgccatgaccggggttcgaactccggtacctccacttg-tatgtgtgagtttata 44948121  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||||||||| |||||| |||||    
T  44948122 atggctttgccatttcgtctat 44948143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 542 - 609
Target Start/End: Complemental strand, 168822 - 168755
Alignment:
Q  542 aagactttaattttcaatataataaatgtacaaactttcataaaatattttcactttaggtgtttaaa 609  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||| ||  ||||||| |||||||||    
T  168822 aagactttaatttccaatataataaatgcacaaactttcataaaatcttaccactttaagtgtttaaa 168755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 371 - 495
Target Start/End: Original strand, 22084 - 22207
Alignment:
Q  371 cataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttt 470  Q
    |||||||| ||  |||||| |||||||||||||||||| |||  |||||||| ||| ||||||||||||      ||||||||||| |||||||||||||    
T  22084 cataagtcttaactcaactaataaaaatgtcaaaattgatagc-cggacgtcatgatcggggttcgaaccccgatacctccactttgtgtgtgtgagttt 22182  T
Q  471 acgatggctttgtcatttcttctat 495  Q
    | |||| ||||||||| || |||||    
T  22183 atgatgactttgtcatctcgtctat 22207  T

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Target: scaffold0633 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 369 - 495
Target Start/End: Complemental strand, 3923 - 3798
Alignment:
Q  369 ttcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagt 468  Q
    |||||||||||||| ||||||| ||||| || | |||||||||| | ||||||| ||| |||||||||||     | |||| || |||||||||||||||    
T  3923 ttcataagtcctagctcaactggtaaaa-tgccgaaattgttaggttggacgtcatgatcggggttcgaatcccggtaccttcattttatgtgtgtgagt 3825  T
Q  469 ttacgatggctttgtcatttcttctat 495  Q
    |||  |||| ||||||||||| |||||    
T  3824 ttataatggttttgtcatttcgtctat 3798  T

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Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 590
Target Start/End: Original strand, 88282 - 88327
Alignment:
Q  545 actttaattttcaatataataaatgtacaaactttcataaaatatt 590  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||    
T  88282 actttaatttccaatataataaatgcacaaactttcataaaatatt 88327  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 9727499 - 9727619
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    |||||||||||||||||| ||||||||| ||||||||||  ||||   | ||| ||||||||||||    | |||||||| || ||||||||||||||      
T  9727499 aagtcctagttcaactgacaaaaatgtcgaaattgttaggccggataccatgatcggggttcgaacccctgtacctccac-ttgtgtgtgtgagtttata 9727597  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||| |||||||||||| |||||    
T  9727598 atgactttgtcatttcgtctat 9727619  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 482
Target Start/End: Original strand, 9297761 - 9297869
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacgggg-ttcgaactatagcacctccactttatgtgtgtgagtttac 472  Q
    |||||||||||||||||| ||||||||| ||||||||||  | |||||| |||  |||| |||||||    | ||||||||||| ||||||||||||||     
T  9297761 aagtcctagttcaactgacaaaaatgtcgaaattgttaggccagacgtcatgattggggtttcgaac-ccggtacctccactttgtgtgtgtgagtttat 9297859  T
Q  473 gatggctttg 482  Q
    ||||| ||||    
T  9297860 gatggttttg 9297869  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 495
Target Start/End: Original strand, 10181069 - 10181169
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||| | |||||||||| ||||| ||| ||| ||||||||||||  | | |||||||| || ||||||||||||||  ||||||||| |||||| |||    
T  10181069 aaaatgccgaaattgttaggtcggatgtcgtgatcggggttcgaaccctggtacctccac-ttgtgtgtgtgagtttataatggctttgccatttcgtct 10181167  T
Q  494 at 495  Q
    ||    
T  10181168 at 10181169  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 609
Target Start/End: Original strand, 5924771 - 5924838
Alignment:
Q  542 aagactttaattttcaatataataaatgtacaaactttcataaaatattttcactttaggtgtttaaa 609  Q
    |||| |||||||||||||| |||| ||| ||||||||||||||||| ||  |||||| |||| |||||    
T  5924771 aagattttaattttcaatacaatatatgcacaaactttcataaaattttaccacttttggtgcttaaa 5924838  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 369 - 495
Target Start/End: Complemental strand, 12795147 - 12795023
Alignment:
Q  369 ttcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagt 468  Q
    |||| ||||||||| ||||||  ||||| || | ||||||||||  |||| ||| ||| ||||||||||||    | |||||||||| ||||||||||||    
T  12795147 ttcagaagtcctagctcaactagtaaaa-tgccgaaattgttaggccggatgtcatgaccggggttcgaaccgcggtacctccactt-atgtgtgtgagt 12795050  T
Q  469 ttacgatggctttgtcatttcttctat 495  Q
    |||  ||||||||| |||||| |||||    
T  12795049 ttataatggctttgccatttcgtctat 12795023  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 471
Target Start/End: Complemental strand, 1266866 - 1266769
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagttta 471  Q
    ||||||||  ||||| | |||||||| | ||||||||||  |||||||| ||| ||||||||| ||   || ||||||| ||| ||||||||||||||    
T  1266866 aagtcctaactcaaccggtaaaaatgccgaaattgttaggccggacgtcatgatcggggttcggacctcagtacctccattttgtgtgtgtgagttta 1266769  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 1855010 - 1855130
Alignment:
Q  374 aagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacg 473  Q
    ||||||||||| |||||  ||||||||| | ||||||||  |||| | | ||| ||||||||||||    | |||||||| || ||||||||||||||      
T  1855010 aagtcctagtttaactggcaaaaatgtcgatattgttaggccggatgccatgatcggggttcgaaccccggtacctccac-ttgtgtgtgtgagtttata 1855108  T
Q  474 atggctttgtcatttcttctat 495  Q
    ||||||||| |||||| |||||    
T  1855109 atggctttgccatttcgtctat 1855130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 495
Target Start/End: Original strand, 6266656 - 6266756
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||||| ||||||||||| |||| ||| ||| ||| ||||||||    | |||||||| || ||||||||||||||  ||||||||| |||||| |||    
T  6266656 aaaatgtcgaaattgttagaccggatgtcatgaccggagttcgaaccccggtacctccac-ttgtgtgtgtgagtttataatggctttgccatttcatct 6266754  T
Q  494 at 495  Q
    ||    
T  6266755 at 6266756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 495
Target Start/End: Original strand, 8939650 - 8939750
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttcttct 493  Q
    |||||| | |||||||||| ||||| ||| ||| ||||||||||||    | |||||||| || ||||||||||||||  ||||||||| |||||| |||    
T  8939650 aaaatgccgaaattgttaggtcggatgtcatgaccggggttcgaaccccggtacctccac-ttgtgtgtgtgagtttataatggctttgccatttcgtct 8939748  T
Q  494 at 495  Q
    ||    
T  8939749 at 8939750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 586
Target Start/End: Original strand, 34556191 - 34556232
Alignment:
Q  545 actttaattttcaatataataaatgtacaaactttcataaaa 586  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  34556191 acttcaatttccaatacaataaatgtacaaactttcataaaa 34556232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 394 - 489
Target Start/End: Original strand, 411672 - 411766
Alignment:
Q  394 aaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaactatagcacctccactttatgtgtgtgagtttacgatggctttgtcatttc 489  Q
    ||||||||||||||||||| ||||| ||| ||| ||||||||||||   || |||||||| || ||||||||| ||||  ||||||||| ||||||    
T  411672 aaaatgtcaaaattgttaggtcggatgtcatgaccggggttcgaaccccagtacctccac-ttgtgtgtgtgattttataatggctttgccatttc 411766  T

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Target: scaffold0262 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 545 - 587
Target Start/End: Original strand, 17585 - 17627
Alignment:
Q  545 actttaattttcaatataataaatgtacaaactttcataaaat 587  Q
    ||||||||||||||| ||||||||||||||| |||||||||||    
T  17585 actttaattttcaatgtaataaatgtacaaaatttcataaaat 17627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 370 - 439
Target Start/End: Complemental strand, 19441 - 19372
Alignment:
Q  370 tcataagtcctagttcaactgataaaaatgtcaaaattgttagatcggacgtcttgaacggggttcgaac 439  Q
    |||||||||||||||||||||  ||||||||  ||||||||||  |||||||| |||  |||||||||||    
T  19441 tcataagtcctagttcaactggcaaaaatgttgaaattgttaggccggacgtcatgattggggttcgaac 19372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 587
Target Start/End: Original strand, 3003 - 3074
Alignment:
Q  516 taaagaaactattctttctaaaaagtaagactttaattttcaatataataaatgtacaaactttcataaaat 587  Q
    |||||||| ||||||||  ||||||||| |||| ||||| || |  |||||||| |||||||||||||||||    
T  3003 taaagaaattattctttaaaaaaagtaaaacttcaatttccactgcaataaatgcacaaactttcataaaat 3074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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