View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3576_low_12 (Length: 462)
Name: NF3576_low_12
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 6 - 447
Target Start/End: Original strand, 38558097 - 38558536
Alignment:
| Q |
6 |
ctgagttatcaggtgtaaaaatcaatgttttggacttacatttagctctttgtgcttttgaaatatttcttatccacaacgtttcaattcggttgctctg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38558097 |
ctgagttatcaggtgtaaaaatcaatgttttggacttacatttagctct--gtgcttttgaaatatttcttatccacaacgtttcaattcggttgctctg |
38558194 |
T |
|
| Q |
106 |
gcatgtatttggtgtcaagtgcttatgagttgaaatataattgaggtcattatgctatggtttcaaatctttcacctgttgcacttcaataaactatcat |
205 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38558195 |
gcatgtatttggtgccaagtgcttatgagttgaaatataattgagatcattatgctatggtttcaaatctttcacctgttgcactgcaataaactatcat |
38558294 |
T |
|
| Q |
206 |
attgtagcaaattggaagaaggctaaattagaaaatgatttctattcagaaacggaattacttgatgcccaagttttacaataagctcgcatatatagga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38558295 |
attgtagcaaattggaagaaggctaaattagaaaatgatttctattcagaaacggaattacttgatgcccaagttttacaataagctcgcatatatagga |
38558394 |
T |
|
| Q |
306 |
ttatgtattctactgtgcaatttgtgtaaagtttcttctaagttctaacagaatactaatttaaattgcttgtttgactataatatcagcaaaatttatt |
405 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38558395 |
ttatatattctactgtgcaatttgtgtaaagcttcttctaagttctaacagaatactaatttaaattgcttgtttgactataatatcagcaaaatttatt |
38558494 |
T |
|
| Q |
406 |
tttgaaactagtttttgaaagaattgtattcttatttaaaac |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38558495 |
tttgaaactagtttttgaaagaattgtattcttatttaaaac |
38558536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University