View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_low_20 (Length: 366)
Name: NF3576_low_20
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_low_20 |
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| [»] scaffold0185 (1 HSPs) |
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| [»] scaffold0048 (4 HSPs) |
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Alignment Details
Target: scaffold0185 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 360
Target Start/End: Complemental strand, 7316 - 6972
Alignment:
| Q |
16 |
atgctcattatggtacttcactttctataccgaccctttacatccatgtactttggaccatatagcaacatcttttggcagctatagtttgagttgcaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7316 |
atgctcattatggtacttcactttctataccgaccctttacatccatgtactttggaccatatagcaacatcttttggcagctatagtttgagttgcaaa |
7217 |
T |
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| Q |
116 |
gagagaaaaggaagatgcatattgaagtcnnnnnnnttccaaagagtttcccaaaacacatcgtaaatactaagcttatgagaaccaaacacattgcata |
215 |
Q |
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| T |
7216 |
gagagaaaaggaagatccatattgatgtcaaaaaaattccaaatagtttcccaaaacacaccgtaaatactaagcttatgagaaccaaccacattgcata |
7117 |
T |
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| Q |
216 |
aaactcaaacttcttttgcttctctaatattgcgcttcctcggctagtttctttctcatgtttttctttggtggacattttctttggttgtgataacttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7116 |
aaactcaaacttcttttgcttctctaatattgcgcttcctcggctagtttctttctcatgttttcctttggtggacattttctttggttgtgataacttt |
7017 |
T |
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| Q |
316 |
ggactatctgaagataaagttgtcaaagacgattgagtagctttg |
360 |
Q |
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| T |
7016 |
ggactatctgaagataaagttgtcaaagacgattgagtggctttg |
6972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 23 - 360
Target Start/End: Complemental strand, 48048 - 47711
Alignment:
| Q |
23 |
ttatggtacttcactttctataccgaccctttacatccatgtactttggaccatatagcaacatcttttggcagctatagtttgagttgcaaagagagaa |
122 |
Q |
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| T |
48048 |
ttatggtacttcactttctataccgaccctttacatccatgtactttggaccatatagcaacatcttttggcatctatagtttgagttccaaagagagaa |
47949 |
T |
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| Q |
123 |
aaggaagatgcatattgaagtcnnnnnnnttccaaagagtttcccaaaacacatcgtaaatactaagcttatgagaaccaaacacattgcataaaactca |
222 |
Q |
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| T |
47948 |
aaggaagatcgaaattgaagtaaaaaatattccaaatagtttcccaaaaaacaccataaatactaatcttatgagaaccaaacaaattgcatgaaactca |
47849 |
T |
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| Q |
223 |
aacttcttttgcttctctaatattgcgcttcctcggctagtttctttctcatgtttttctttggtggacattttctttggttgtgataactttggactat |
322 |
Q |
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| T |
47848 |
aacttcttttatttctctaatattgcgcttcttcggctagtatctttctcatgttttcctttggtggacgtgatctttgattgtgatacctttgaactat |
47749 |
T |
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| Q |
323 |
ctgaagataaagttgtcaaagacgattgagtagctttg |
360 |
Q |
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| T |
47748 |
ctgaagataaagttgacaaagacgattgcgtagctttg |
47711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 16 - 360
Target Start/End: Complemental strand, 60648 - 60315
Alignment:
| Q |
16 |
atgctcattatggtacttcactttctataccgaccctttacatccatgtactttggaccatatagcaacatcttttggcagctatagtttgagttgcaaa |
115 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
60648 |
atgctcattatggtacttcactttcta-----------tacatccatgtattttgcgccatatagcaacatcttttggcagatatagtttgagttccaaa |
60560 |
T |
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| Q |
116 |
gagagaaaaggaagatgcatattgaagtcnnnnnnnttccaaagagtttcccaaaacacatcgtaaatactaagcttatgagaaccaaacacattgcata |
215 |
Q |
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| T |
60559 |
gagagaaaaggaagatccatatcgatgtcaaaaaaataccaaatattttcccaaaaaacacagtaaatactaagcttatgagtaccaaagaaattgcata |
60460 |
T |
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| Q |
216 |
aaactcaaacttcttttgcttctctaatattgcgcttcctcggctagtttctttctcatgtttttctttggtggacattttctttggttgtgataacttt |
315 |
Q |
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||||||||| |||||||||||||||| ||||| ||||||||||| ||| |||||||| |||||| ||||||||||||| |||||| |||||||| |||| |
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| T |
60459 |
aaactcaaaattcttttgcttctctattattgtgcttcctcggcaagtatctttctcttgttttcctttggtggacatgatctttgattgtgataccttt |
60360 |
T |
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| Q |
316 |
ggactatctgaagataaagttgtcaaagacgattgagtagctttg |
360 |
Q |
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| T |
60359 |
gaactatctgaagatatagctgtcaaagacgattcagtagctttg |
60315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 72 - 353
Target Start/End: Original strand, 85235 - 85516
Alignment:
| Q |
72 |
accatatagcaacatcttttggcagctatagtttgagttgcaaagagagaaaaggaagatgcatattgaagtcnnnnnnnttccaaagagtttcccaaaa |
171 |
Q |
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||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| ||| |
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| T |
85235 |
accatatggcaacatctttcggcacctatagtttgagttgcaaagagagaaaaggaagatccatattgaagtcagaaaaattccaaatagtttcccgaaa |
85334 |
T |
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| Q |
172 |
cacatcgtaaatactaagcttatgagaaccaaacacattgcataaaactcaaacttcttttgcttctctaatattgcgcttcctcggctagtttctttct |
271 |
Q |
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||| ||||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |||||||||||||||||| || | |||||||||||| |
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| T |
85335 |
aacacagtaaatactaagcttattagaaccaaacaaattgcacgaaactcaaacttcttttgtttctctaatattgcgctttcttgtttagtttctttct |
85434 |
T |
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| Q |
272 |
catgtttttctttggtggacattttctttggttgtgataactttggactatctgaagataaagttgtcaaagacgattgagt |
353 |
Q |
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| T |
85435 |
catgttttcctttggtggacatgttctttgattgtgataccgttgaattatctgaagataaacttgtcaaagacgattgagt |
85516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 85159 - 85212
Alignment:
| Q |
20 |
tcattatggtacttcactttctataccgaccctttacatccatgtactttggac |
73 |
Q |
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| T |
85159 |
tcattatggtacttcactttctataatgaccattcacatccatatactttggac |
85212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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