View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_low_22 (Length: 363)
Name: NF3576_low_22
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_low_22 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 151 - 363
Target Start/End: Original strand, 12640472 - 12640684
Alignment:
| Q |
151 |
aaaattgatcagcaatggaaggtagtgtcggagttgaacggccattgaaactttacttgcttccatttctatcacctggtcatatgattcctttgggtga |
250 |
Q |
| |
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|||| |||||||||||||||| | |||| |||||||||||||||||||||||| | | |||||||||||| |||||||||||||||||||||||||||| |
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| T |
12640472 |
aaaactgatcagcaatggaagatggtgttggagttgaacggccattgaaacttctcatacttccatttctagcacctggtcatatgattcctttgggtga |
12640571 |
T |
|
| Q |
251 |
catagcaactctgtttgcatcccatggccaacaagtcacgatcatcaccactcctgccaatgctcatttctttagcaaatctctctcctccgtcgatccg |
350 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||| |||||||||| |
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| T |
12640572 |
catagcagctttgtttgcatcccatggccaacaagtcacgatcatcaccactccctccaacgcccatttctttaccaaatctctctccttcgtcgatccg |
12640671 |
T |
|
| Q |
351 |
tttttcctccgcc |
363 |
Q |
| |
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||||||||||||| |
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| T |
12640672 |
tttttcctccgcc |
12640684 |
T |
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Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 182 - 304
Target Start/End: Complemental strand, 48963446 - 48963324
Alignment:
| Q |
182 |
agttgaacggccattgaaactttacttgcttccatttctatcacctggtcatatgattcctttgggtgacatagcaactctgtttgcatcccatggccaa |
281 |
Q |
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||||||||| |||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||| |
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| T |
48963446 |
agttgaacgaccattgaaacttcacttcattccatatcttgcacctggtcatatgattcctttgggtgacatagcagctctgtttgcgtcccgtggccaa |
48963347 |
T |
|
| Q |
282 |
caagtcacgatcatcaccactcc |
304 |
Q |
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|||||||| |||||||||||||| |
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| T |
48963346 |
caagtcacaatcatcaccactcc |
48963324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 196 - 337
Target Start/End: Complemental strand, 48959290 - 48959149
Alignment:
| Q |
196 |
tgaaactttacttgcttccatttctatcacctggtcatatgattcctttgggtgacatagcaactctgtttgcatcccatggccaacaagtcacgatcat |
295 |
Q |
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|||||||| |||| |||||| || | ||||||| |||||||| || || |||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
48959290 |
tgaaacttcacttcattccatatccagcacctgggcatatgatccccatgtgtgacatagcaactctgtttgcatcccatggccaacaagtgacaatcat |
48959191 |
T |
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| Q |
296 |
caccactcctgccaatgctcatttctttagcaaatctctctc |
337 |
Q |
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||||||||| |||| | || ||||||| |||||||||||| |
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| T |
48959190 |
caccactccctccaactcccacttctttaccaaatctctctc |
48959149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 304
Target Start/End: Complemental strand, 48966487 - 48966370
Alignment:
| Q |
187 |
aacggccattgaaactttacttgcttccatttctatcacctggtcatatgattcctttgggtgacatagcaactctgtttgcatcccatggccaacaagt |
286 |
Q |
| |
|
|||| ||| |||||||| |||| |||||| |||| |||| || |||||||| ||| || |||||||||||||| | |||||||| |||||||||||||| |
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| T |
48966487 |
aacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactatctttgcatctcatggccaacaagt |
48966388 |
T |
|
| Q |
287 |
cacgatcatcaccactcc |
304 |
Q |
| |
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||| |||||||| ||||| |
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| T |
48966387 |
caccatcatcacaactcc |
48966370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 304
Target Start/End: Original strand, 12589219 - 12589331
Alignment:
| Q |
192 |
ccattgaaactttacttgcttccatttctatcacctggtcatatgattcctttgggtgacatagcaactctgtttgcatcccatggccaacaagtcacga |
291 |
Q |
| |
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||||| |||||| |||| |||||| |||||||||||| |||||||| ||| | ||||||| ||||| ||||||||||||| ||||||||||||||| | |
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| T |
12589219 |
ccattaaaacttcacttcattccatatctatcacctgggcatatgatccctctatgtgacattgcaaccctgtttgcatcccgtggccaacaagtcacaa |
12589318 |
T |
|
| Q |
292 |
tcatcaccactcc |
304 |
Q |
| |
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||| ||||||||| |
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| T |
12589319 |
tcaccaccactcc |
12589331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 182 - 310
Target Start/End: Original strand, 12482477 - 12482605
Alignment:
| Q |
182 |
agttgaacggccattgaaactttacttgcttccatttctatcacctggtcatatgattcctttgggtgacatagcaactctgtttgcatcccatggccaa |
281 |
Q |
| |
|
||||||||| |||||||||||| |||| ||||||||| | ||||||| |||||||| ||| || | | || ||||||||||||||||| | |||||| |
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| T |
12482477 |
agttgaacgaccattgaaacttcacttcattccatttccagcacctgggcatatgatccctatgtgcaagattgcaactctgtttgcatcacgtggccat |
12482576 |
T |
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| Q |
282 |
caagtcacgatcatcaccactcctgccaa |
310 |
Q |
| |
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|| ||||| ||||||||||||||| |||| |
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| T |
12482577 |
catgtcacaatcatcaccactccttccaa |
12482605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 342
Target Start/End: Complemental strand, 13441359 - 13441203
Alignment:
| Q |
186 |
gaacggccattgaaactttacttgcttccatttctatcacctggtcatatgattcctttgggtgacatagcaactctgtttgcatcccatggccaacaag |
285 |
Q |
| |
|
||||| ||| ||||| || |||| |||||| |||| || |||| |||||||| ||| | |||||||||||||| |||||||||||| ||||||||||| |
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| T |
13441359 |
gaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacatagcaactatgtttgcatcccgtggccaacaag |
13441260 |
T |
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| Q |
286 |
tcacgatcatcaccactcctgccaatgctcatttctttagcaaatctctctcctccg |
342 |
Q |
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|||| |||||||||||||| |||| ||||| | | | | |||||||||||| |||| |
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| T |
13441259 |
tcacaatcatcaccactccctccaacgctcaatccctaaccaaatctctctcatccg |
13441203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 310
Target Start/End: Complemental strand, 13449526 - 13449398
Alignment:
| Q |
182 |
agttgaacggccattgaaactttacttgcttccatttctatcacctggtcatatgattcctttgggtgacatagcaactctgtttgcatcccatggccaa |
281 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||||||||| || |||| |||||||| ||| | ||||||||||||| |||||||||||| |||||| |
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| T |
13449526 |
agttgaacaaccattgaaagtttacttcattccatttcttgcatctggacatatgatccctctttttgacatagcaactatgtttgcatcccgtggccag |
13449427 |
T |
|
| Q |
282 |
caagtcacgatcatcaccactcctgccaa |
310 |
Q |
| |
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||||| || ||||||||||||| ||||| |
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| T |
13449426 |
caagtaacagtcatcaccactcccgccaa |
13449398 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 304
Target Start/End: Complemental strand, 13462572 - 13462425
Alignment:
| Q |
154 |
attgatcagcaatggaaggtagtgtcggagttgaacggccattgaaactttacttgcttccatttctatcacctggtcatatgattcctttgggtgacat |
253 |
Q |
| |
|
|||| ||||||||||||||| || | |||||||| ||| ||||||| |||| |||||| |||| || |||| |||||||| ||| | |||||| |
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| T |
13462572 |
attgttcagcaatggaaggt---gtagaagttgaacaaccactgaaactgcacttcattccatatctagcatctggacatatgatccctctttttgacat |
13462476 |
T |
|
| Q |
254 |
agcaactctgtttgcatcccatggccaacaagtcacgatcatcaccactcc |
304 |
Q |
| |
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||||| | |||||||||||| ||||||||| ||||| ||||||||||||| |
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| T |
13462475 |
agcaattatgtttgcatcccgtggccaacacgtcacagtcatcaccactcc |
13462425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 304
Target Start/End: Complemental strand, 12541792 - 12541714
Alignment:
| Q |
226 |
ctggtcatatgattcctttgggtgacatagcaactctgtttgcatcccatggccaacaagtcacgatcatcaccactcc |
304 |
Q |
| |
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|||| |||||||| ||| | |||| ||||||||| |||||||||| ||||||||||||||||| |||||||||||||| |
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|
| T |
12541792 |
ctggacatatgatccctctttgtgatatagcaactttgtttgcatcacatggccaacaagtcacaatcatcaccactcc |
12541714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 313
Target Start/End: Complemental strand, 28386491 - 28386360
Alignment:
| Q |
182 |
agttgaacggccattgaaactttacttgcttccatttctatcacctggtcatatgattcctttgggtgacatagcaactctgtttgcatcccatggccaa |
281 |
Q |
| |
|
||||||| | |||||||||||| |||| |||| | || | || |||| |||||||| || | |||| ||||||||| |||||||||| | ||||||| |
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|
| T |
28386491 |
agttgaaagaccattgaaacttcacttcattccgtatccagcatctggacatatgatgccactttgtgatatagcaactttgtttgcatcacgtggccaa |
28386392 |
T |
|
| Q |
282 |
caagtcacgatcatcaccactcctgccaatgc |
313 |
Q |
| |
|
|| ||||| |||||||||||||| ||||||| |
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|
| T |
28386391 |
catgtcacaatcatcaccactccctccaatgc |
28386360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 3416622 - 3416683
Alignment:
| Q |
252 |
atagcaactctgtttgcatcccatggccaacaagtcacgatcatcaccactcctgccaatgc |
313 |
Q |
| |
|
|||||| || |||||||||||||||||||||| ||||| |||||||||||||| ||||||| |
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|
| T |
3416622 |
atagcagctatgtttgcatcccatggccaacatgtcacaatcatcaccactccctccaatgc |
3416683 |
T |
|
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