View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_low_28 (Length: 318)
Name: NF3576_low_28
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 111 - 301
Target Start/End: Complemental strand, 1202678 - 1202492
Alignment:
| Q |
111 |
aatatcaagatcttaaatgaaattttttgctaacaaatggtggtgacatgtgagaaataacaacaatccaaaaagctcaaaagctaattagccatcatca |
210 |
Q |
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| T |
1202678 |
aatatcaagatcttaaatgaaattttt-gctaacaaatggtggtgacatgtgagaaataacaa---tccaaaaagctcaaaagctaattagccatcatca |
1202583 |
T |
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| Q |
211 |
aaaggagaaaaatataaatttattaactaagaagaactatcaaatttttgaactgaatacctcacttccaaactacctggaagtagactac |
301 |
Q |
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| T |
1202582 |
aaaggagaaaaatataaatttattaactaagaagaactatcaaatttttgaactgaatacctcacttccaaactacctggaagtagactac |
1202492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 1204021 - 1203927
Alignment:
| Q |
20 |
tttgaagtagaggcgcaattataaataaagactgaagatttttaacaaaccaattaagagcagtttttgttaggagtgggaaactaagcagaata |
114 |
Q |
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| T |
1204021 |
tttgaagtagaggcgcaattataaataaagactgaagatttttaacaaaccaattaagagcagtttttgttaggagtgggaaactaagcagaata |
1203927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 113
Target Start/End: Complemental strand, 1200780 - 1200751
Alignment:
| Q |
84 |
ttttgttaggagtgggaaactaagcagaat |
113 |
Q |
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| T |
1200780 |
ttttgttaggagtgggaaactaagcagaat |
1200751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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