View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_low_29 (Length: 313)
Name: NF3576_low_29
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 580905 - 580594
Alignment:
| Q |
1 |
ctttgatgattcgaatttgatagattttgagtgactgaattcaccaagaagtgcagcagcatggaaatctgacatataacttacaaagtgttggctctca |
100 |
Q |
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| T |
580905 |
ctttgatgactcgaatttgatagattttgagtgactgaattcaccaagaagtgcagcagcatggaaatctgacatataacttacaaagtgttggctctca |
580806 |
T |
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| Q |
101 |
tataaattgattttagccgaagcatggcatggggacttaattataatgttttgtgatatatcaaaaccgcaaaaactgaattctttcagatcctcagaat |
200 |
Q |
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| T |
580805 |
tataaattgattttagctgaagcatggcatggggacttaattataatgttttgtgatatatcaaaaccgcaaaaactgaattctttcagatcctcagaat |
580706 |
T |
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| Q |
201 |
cagggaagcagataaatgatttgtcacgtttacaaggaacaccgacgctatgttcgattgaaatgctttcaagtagaggcgcgtatatcataaccaaaga |
300 |
Q |
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| T |
580705 |
cagggaagcagataaatgatttgtcacgtttacaaggaacaccgacgctatgttcgattgaaatgctttcaagtagaggcgcgtatatcataaccaaaga |
580606 |
T |
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| Q |
301 |
tgtatcaacaaa |
312 |
Q |
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| T |
580605 |
tgtatcaacaaa |
580594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 1214381 - 1214316
Alignment:
| Q |
95 |
ctctcatataaattgattttagccgaagcatggcatggggacttaattataatgttttgtgatata |
160 |
Q |
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| T |
1214381 |
ctctcatgtaaaatgattttagtagaagcatggcatggggacgtcattaaaatgtgttgtggtata |
1214316 |
T |
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