View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_low_30 (Length: 310)
Name: NF3576_low_30
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 52 - 300
Target Start/End: Original strand, 29225064 - 29225302
Alignment:
| Q |
52 |
atgtagtatcttttaccttgtactgactggtatggtaccttactacctacgcatcatgcatatagccattaacatttgttgttaaacaata----tattg |
147 |
Q |
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| T |
29225064 |
atgtagtatcttttaccttgtactg----gtatggtaccttac---ctacgcatcat----atagccattaacatttgttgttaaacaataaatatattg |
29225152 |
T |
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| Q |
148 |
caaatttgacttacatagttcattcattattattatgcagctgtggaatccataggagtttgctatggaatgattggaaataatctaccatcaaggcaag |
247 |
Q |
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| T |
29225153 |
caa---tgacttacatagttcattcattattattatgcagctgtggaatccataggagtttgctatggaatgattggaaataatctaccatcaaggcaag |
29225249 |
T |
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| Q |
248 |
atgttgtgaatttatataaatcaagaggcattaaccaaatgcgtatattcttc |
300 |
Q |
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| T |
29225250 |
atgttgtgaatttatataaatcaagaggcattaaccaaatgcgtatattcttc |
29225302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 170 - 291
Target Start/End: Original strand, 29229837 - 29229957
Alignment:
| Q |
170 |
ttcattattattatgcagctgtggaatccataggagtttgctatggaatgattggaaataatctaccatcaaggcaagatgttgtgaatttatataaatc |
269 |
Q |
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| T |
29229837 |
ttcattattat-atgcagctgtggaatccataggagtttgctatgggatgattggaaataatctaccatctaggcaagatgttgtgaatttatatagatc |
29229935 |
T |
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| Q |
270 |
aagaggcattaaccaaatgcgt |
291 |
Q |
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| T |
29229936 |
aagaggcattaaccaaatgcgt |
29229957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 174 - 300
Target Start/End: Original strand, 29234609 - 29234735
Alignment:
| Q |
174 |
ttattattatgcagctgtggaatccataggagtttgctatggaatgattggaaataatctaccatcaaggcaagatgttgtgaatttatataaatcaaga |
273 |
Q |
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| T |
29234609 |
ttattgttacgcagttgtgcaatccgtaggagtttgctatggaatgcttggcaataatctaccatcaaggcaagaagttgtggatttatataagtcaaat |
29234708 |
T |
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| Q |
274 |
ggcattaaccaaatgcgtatattcttc |
300 |
Q |
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| T |
29234709 |
ggcattgactaaatgcgtatatacttc |
29234735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 29240362 - 29240478
Alignment:
| Q |
184 |
gcagctgtggaatccataggagtttgctatggaatgattggaaataatctaccatcaaggcaagatgttgtgaatttatataaatcaagaggcattaacc |
283 |
Q |
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| T |
29240362 |
gcagttgtgcaatccgtaggagtttgctatggagtgcttggcaataatctaccatcaagtcaagaagttgtggacttatataagtcaaatggcattgaca |
29240461 |
T |
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| Q |
284 |
aaatgcgtatattcttc |
300 |
Q |
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| T |
29240462 |
aaatgcgtatatacttc |
29240478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 205 - 295
Target Start/End: Original strand, 29250657 - 29250747
Alignment:
| Q |
205 |
gtttgctatggaatgattggaaataatctaccatcaaggcaagatgttgtgaatttatataaatcaagaggcattaaccaaatgcgtatat |
295 |
Q |
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| T |
29250657 |
gtttgctatggagtgcttggcaataatctaccatcaaagcaagaagttgtagatttatataaatcaaaaggcattggcaaaatgcgtatat |
29250747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 29224642 - 29224686
Alignment:
| Q |
16 |
atatataactctctcttatcatatatactatatgttatgtagtat |
60 |
Q |
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| T |
29224642 |
atatataactctctcttatcatatatactatatgttatgtagtat |
29224686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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