View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_low_35 (Length: 301)
Name: NF3576_low_35
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 28663876 - 28663700
Alignment:
| Q |
23 |
taggcaacatatgtggggtctagctttgggtccactgtggggtatagtctgtggaccaaattcatgcaatgtactcttcccactgagtgtcctcctgatt |
122 |
Q |
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| T |
28663876 |
taggcagcatatgtggggtctagctttgggtccaccgtggggtatagtctatggaccatattcatgcaatgtactcttcccactgagtgtcctcctgatt |
28663777 |
T |
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| Q |
123 |
gaatcaaagtgaccaattaattatgtttatgtttgacttttgaagtaaatgttatataatgtatatgaagcacggacac |
201 |
Q |
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| T |
28663776 |
gaatcaaagtgaccaattaattatgtttatgtttgacttttgaagtaaatgt--tataatgtatatgaagcacagacac |
28663700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 28636281 - 28636186
Alignment:
| Q |
48 |
ttgggtccactgtggggtatagtctgtggaccaaattcatgcaatgtactcttcccactgagtgtcctcctgattgaatcaaagtgaccaattaat |
143 |
Q |
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| T |
28636281 |
ttggatccactgtggggtatagtctgtggaccaaattcatgcaatgtactcttccaactgagtgtgctcctgatttaatcaaagtgaccagttaat |
28636186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 28606522 - 28606406
Alignment:
| Q |
22 |
gtaggcaacatatgtggggtctagctttgggtccactgtggggtatagtctgtggaccaaattcatgcaatgtactcttcccactgagtgtcctcctgat |
121 |
Q |
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| T |
28606522 |
gtaggcagcatgtgtaggatctaacgttggatccactgtggggtatagtctgtggaccaaattcatgcaatgtactcttccaaccgagtgtgctcctaat |
28606423 |
T |
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| Q |
122 |
tgaatcaaagtgaccaa |
138 |
Q |
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| T |
28606422 |
tgaatcaaagtgaccaa |
28606406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 28656801 - 28656682
Alignment:
| Q |
22 |
gtaggcaacatatgtggggtctagctttgggtccactgtggggtatagtctgtggaccaaattcatgcaatgtactcttcccactgagtgtcctcctgat |
121 |
Q |
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|||| |||||||||| ||||||||| ||||||||||| | ||||||||||||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| |
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| T |
28656801 |
gtagacaacatatgtagggtctagcgttgggtccactatagggtatagtctgtggaccatatttatgcagtgtactcttcccactgaatgtgctcctgat |
28656702 |
T |
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| Q |
122 |
tgaatcaaagtgaccaatta |
141 |
Q |
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| T |
28656701 |
tcaatcatagtgaccaatta |
28656682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 26830645 - 26830606
Alignment:
| Q |
197 |
gacacgacacttgtaatcacatttaattatgtgatttttt |
236 |
Q |
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| T |
26830645 |
gacacgacacttataattacatttaattatgtgatttttt |
26830606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 426520 - 426555
Alignment:
| Q |
201 |
cgacacttgtaatcacatttaattatgtgatttttt |
236 |
Q |
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| T |
426520 |
cgacacttgtaattacatttaattatgtgatttttt |
426555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 4118341 - 4118374
Alignment:
| Q |
203 |
acacttgtaatcacatttaattatgtgatttttt |
236 |
Q |
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| T |
4118341 |
acacttgtaattacatttaattatgtgatttttt |
4118374 |
T |
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