View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_low_39 (Length: 287)
Name: NF3576_low_39
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_low_39 |
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| [»] scaffold0166 (1 HSPs) |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 271
Target Start/End: Complemental strand, 43407146 - 43406890
Alignment:
| Q |
12 |
agagagattgattgcttattaagtaatatcattaaaaatcataaaatagatgatgtgtgtatatacatgattcatttaaacacctaaaataaaatgctat |
111 |
Q |
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| T |
43407146 |
agagagattgattgcttattaagtaatatcattgaaaatcataaaatagata---tgtgtatatacatgattcacttaaacacctaaaataaaatgctat |
43407050 |
T |
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| Q |
112 |
gttatagatggtctaattgtcccatgagcatgctaaacatgtctcaaatgagacggaggcggtagcaataattaaggctagaagttaaaactagcaaatc |
211 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43407049 |
gttgtagatggtctaattgtcccataagcatgctaaacatgtctcaaatgagacggaggcggtagcaataattaaggctagaagttaaaactagcaaatc |
43406950 |
T |
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| Q |
212 |
acccttaatggtacaggtaagcactattaatattattgcaacagtaacaccagaaaaacc |
271 |
Q |
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| T |
43406949 |
acccttaatggtacaggtaagcactattaatattattgcaacagtaacaccaaaaaaacc |
43406890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 31115402 - 31115498
Alignment:
| Q |
27 |
ttattaagtaatatcattaaaaatcataaaatagatgatgtgtgtatatacatgattcatttaaacacctaaaataaaatgctatgttatagatggtct |
125 |
Q |
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| T |
31115402 |
ttattaagtaatatcattgaaaattataaaatagat--tatgtgtacatgcatgactcacttaagtacctaaaatatagtgttatgttgtagatggtct |
31115498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 3105503 - 3105555
Alignment:
| Q |
14 |
agagattgattgcttattaagtaatatcattaaaaatcataaaatagatgatg |
66 |
Q |
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| T |
3105503 |
agagattggatgtttattaagtaatatcattgaaaattataaaataggtgatg |
3105555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 7516 - 7479
Alignment:
| Q |
13 |
gagagattgattgcttattaagtaatatcattaaaaat |
50 |
Q |
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| T |
7516 |
gagagattgaatgcttattaagtaatatcattaaaaat |
7479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 24765019 - 24764982
Alignment:
| Q |
13 |
gagagattgattgcttattaagtaatatcattaaaaat |
50 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
24765019 |
gagagattgaatgcttattaagtaatatcattaaaaat |
24764982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 14126051 - 14126014
Alignment:
| Q |
13 |
gagagattgattgcttattaagtaatatcattaaaaat |
50 |
Q |
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| T |
14126051 |
gagagattgactgcttattaagtaatatcattgaaaat |
14126014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 23419348 - 23419393
Alignment:
| Q |
24 |
tgcttattaagtaatatcattaaaaatcataaaatagatgatgtgt |
69 |
Q |
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| T |
23419348 |
tgcttattaagtaatatcatttaaatttataaaatagatgacgtgt |
23419393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 12268173 - 12268116
Alignment:
| Q |
13 |
gagagattgattgcttattaagtaatatcatt-aaaaatcataaaatagatgatgtgt |
69 |
Q |
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|||||||||| ||||||||||||||||| ||| |||| | | |||||||||||||||| |
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| T |
12268173 |
gagagattgagtgcttattaagtaatataattgaaaattaaaaaaatagatgatgtgt |
12268116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 34316 - 34268
Alignment:
| Q |
16 |
agattgattgcttattaagtaatatcattaaaaatcataaaatagatga |
64 |
Q |
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| T |
34316 |
agattgagtacttattaaataatatcattgaaaattataaaatagatga |
34268 |
T |
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