View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3576_low_4 (Length: 558)

Name: NF3576_low_4
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3576_low_4
NF3576_low_4
[»] chr3 (4 HSPs)
chr3 (151-369)||(53222344-53222562)
chr3 (355-544)||(53222140-53222328)
chr3 (48-143)||(3267064-3267159)
chr3 (79-140)||(46696627-46696688)
[»] chr7 (5 HSPs)
chr7 (10-140)||(41970618-41970748)
chr7 (12-140)||(38364158-38364286)
chr7 (10-140)||(22616305-22616436)
chr7 (73-140)||(26921729-26921796)
chr7 (50-124)||(38672432-38672506)
[»] chr2 (3 HSPs)
chr2 (12-140)||(29483281-29483409)
chr2 (79-140)||(39790671-39790732)
chr2 (44-117)||(41231311-41231384)
[»] chr1 (9 HSPs)
chr1 (10-140)||(16136617-16136748)
chr1 (10-140)||(26209808-26209940)
chr1 (47-140)||(14244634-14244728)
chr1 (29-128)||(5355234-5355334)
chr1 (54-144)||(4747322-4747412)
chr1 (86-140)||(6013513-6013567)
chr1 (79-140)||(24763537-24763598)
chr1 (98-143)||(42226050-42226095)
chr1 (98-138)||(39075275-39075315)
[»] chr8 (3 HSPs)
chr8 (50-144)||(15889413-15889507)
chr8 (50-144)||(43187770-43187864)
chr8 (92-140)||(22484254-22484302)
[»] scaffold0186 (2 HSPs)
scaffold0186 (86-140)||(18841-18895)
scaffold0186 (86-140)||(19577-19631)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 151 - 369
Target Start/End: Complemental strand, 53222562 - 53222344
Alignment:
Q  151 attgtctaatatataaagtgcacacgaataatttagatacgaaagaatcaataaagacgtaaatggatccaccgaccaaaggaggatatattaacttata 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  53222562 attgtctaatatataaagtgcacacgaataatttagatacgaaagaatcaataaagacgtaaatggatccaccgaccataggaggatatattaacttata 53222463  T
Q  251 aaattttcaaatcaaaaatgtttttcatctttataaccattttccttataaaataattaagataatcatgttgatcagagttaagtgggaccgtattact 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53222462 aaattttcaaatcaaaaatgtttttcatctttataaccattttccttataaaataattaagataatcatgttgatcagagttaagtgggaccgtattact 53222363  T
Q  351 atttgagttaaattttgat 369  Q
    |||||||||||||||||||    
T  53222362 atttgagttaaattttgat 53222344  T

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Target: chr3; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 355 - 544
Target Start/End: Complemental strand, 53222328 - 53222140
Alignment:
Q  355 gagttaaattttgatatgttgttaatatatgaaaatatttctacgtcaacgaagtttttagacaaggtcagtataatatatttctacttcataccaannn 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  53222328 gagttaaattttgatatgttgttaatatatgaaaatatttctacgtcaacgaagtttttagacaaggtcagtataatatatttctacttcataccaattt 53222229  T
Q  455 nnnnagacgataaaaattaatctaactaggtaagaagttgacttatatcccccaagcatgtgagttaatttttggtgtaggtgtgaaaac 544  Q
        ||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  53222228 ttttagacgataaaaattaat-taagtaggtaagaagttgacttatatctcccaagcatgtgagttaatttttggtgtaggtgtgaaaac 53222140  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 3267159 - 3267064
Alignment:
Q  48 gatttgacaaaactacccctgcttaatggtggaaatatccaaactatccatggtgtcgtatttgtgtcaaatattttgtgtctagttatcattgct 143  Q
    |||||||||||| | |||||  || ||||| ||||| || |||||||||||||||| ||||||||||| |||  ||||||| || |||||||||||    
T  3267159 gatttgacaaaattgcccctaatttatggttgaaatgtctaaactatccatggtgttgtatttgtgtccaatcatttgtgtttaattatcattgct 3267064  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 46696688 - 46696627
Alignment:
Q  79 gaaatatccaaactatccatggtgtcgtatttgtgtcaaatattttgtgtctagttatcatt 140  Q
    ||||| || ||||||| |||| ||| |||||||||||||||||| ||||  |||||||||||    
T  46696688 gaaatgtcaaaactattcatgttgtagtatttgtgtcaaatattatgtgcttagttatcatt 46696627  T

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Target: chr7 (Bit Score: 123; Significance: 6e-63; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 41970618 - 41970748
Alignment:
Q  10 gcagagaagatgggattgggaagaagatgggtctatgggatttgacaaaactacccctgcttaatggtggaaatatccaaactatccatggtgtcgtatt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  41970618 gcagagaagatgggattgggaagaagatgggtctatgggatttgacaaaactacccctacttaatggtggaaatatccaaactacccatggtgtcgtatt 41970717  T
Q  110 tgtgtcaaatattttgtgtctagttatcatt 140  Q
    |||||||||||||||||||||||||||||||    
T  41970718 tgtgtcaaatattttgtgtctagttatcatt 41970748  T

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Target: chr7; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 38364286 - 38364158
Alignment:
Q  12 agagaagatgggattgggaagaagatgggtctatgggatttgacaaaactacccctgcttaatggtggaaatatccaaactatccatggtgtcgtatttg 111  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38364286 agagaagatgagattgggaagaagatgggtctatgggatttgacaaaactacccctgcttaatggtggaaatatccaaactacccatggtgtcgtatttg 38364187  T
Q  112 tgtcaaatattttgtgtctagttatcatt 140  Q
    |||||||||||||||||||||||||||||    
T  38364186 tgtcaaatattttgtgtctagttatcatt 38364158  T

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Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 22616436 - 22616305
Alignment:
Q  10 gcagagaagatgggattgggaagaagatgggtctatggg-atttgacaaaactacccctgcttaatggtggaaatatccaaactatccatggtgtcgtat 108  Q
    |||| |||||||||| |  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22616436 gcagggaagatgggagtatgaagaagatgggtctatggggatttgacaaaactacccctgcttaatggtggaaatatccaaactacccatggtgtcgtat 22616337  T
Q  109 ttgtgtcaaatattttgtgtctagttatcatt 140  Q
    |||||||||||||||||||| |||||||||||    
T  22616336 ttgtgtcaaatattttgtgtttagttatcatt 22616305  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 26921796 - 26921729
Alignment:
Q  73 atggtggaaatatccaaactatccatggtgtcgtatttgtgtcaaatattttgtgtctagttatcatt 140  Q
    ||||| ||||||||||||||| ||||| | | |||||||||||||||||||| |||| | ||||||||    
T  26921796 atggttgaaatatccaaactacccatgatattgtatttgtgtcaaatattttctgtcgaattatcatt 26921729  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 124
Target Start/End: Complemental strand, 38672506 - 38672432
Alignment:
Q  50 tttgacaaaactacccctgcttaatggtggaaatatccaaactatccatggtgtcgtatttgtgtcaaatatttt 124  Q
    ||||||||||||  ||||| || |||   ||||| ||||||||||||||| ||| | ||||||||||||||||||    
T  38672506 tttgacaaaactgtccctgttttatgagtgaaatgtccaaactatccatgatgttgaatttgtgtcaaatatttt 38672432  T

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Target: chr2 (Bit Score: 121; Significance: 1e-61; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 29483409 - 29483281
Alignment:
Q  12 agagaagatgggattgggaagaagatgggtctatgggatttgacaaaactacccctgcttaatggtggaaatatccaaactatccatggtgtcgtatttg 111  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29483409 agagaagatgtgattgggaagaagatgggtctatgggatttgacaaaactacccctgcttaatggtggaaatatccaaactacccatggtgtcgtatttg 29483310  T
Q  112 tgtcaaatattttgtgtctagttatcatt 140  Q
    |||||||||||||||||||||||||||||    
T  29483309 tgtcaaatattttgtgtctagttatcatt 29483281  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 39790671 - 39790732
Alignment:
Q  79 gaaatatccaaactatccatggtgtcgtatttgtgtcaaatattttgtgtctagttatcatt 140  Q
    |||||| |||||||||||||| ||| |||| ||||||| ||||||| ||| || ||||||||    
T  39790671 gaaatacccaaactatccatgatgttgtatctgtgtcacatattttatgtttatttatcatt 39790732  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 41231311 - 41231384
Alignment:
Q  44 atgggatttgacaaaactacccctgcttaatggtggaaatatccaaactatccatggtgtcgtatttgtgtcaa 117  Q
    ||||||||| |||||||| ||||  ||| ||||| ||||| || ||||  |||||||||| |||||||||||||    
T  41231311 atgggattttacaaaactgcccccactttatggttgaaatgtcaaaacagtccatggtgttgtatttgtgtcaa 41231384  T

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Target: chr1 (Bit Score: 96; Significance: 8e-47; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 16136617 - 16136748
Alignment:
Q  10 gcagagaagatgggattgggaagaagatgggtctatggg-atttgacaaaactacccctgcttaatggtggaaatatccaaactatccatggtgtcgtat 108  Q
    |||| |||||||| | | |||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  16136617 gcagggaagatggaagtaggaagaagatgggtctgtggggatttgacaaaactgcccctgcttaatggtggaaatatccaaactacccatggtgtcgtat 16136716  T
Q  109 ttgtgtcaaatattttgtgtctagttatcatt 140  Q
    ||||||||||||||||||||||||||||||||    
T  16136717 ttgtgtcaaatattttgtgtctagttatcatt 16136748  T

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Target: chr1; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 26209808 - 26209940
Alignment:
Q  10 gcagagaagatgggattgggaagaagatgggtctatggg-atttgacaaaactacccctgcttaatggtggaaatatccaaactatccatggtgtcgtat 108  Q
    |||| |||||||||| | |||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  26209808 gcagggaagatgggagtaggaagaagatgggtctgtggggatttgacaaaactgcccctgcttaatggtggaaatatccaaactacccatggtgtcgtat 26209907  T
Q  109 ttgtgtcaaatattttgtgtc-tagttatcatt 140  Q
    ||||||||||||||||||||| |||||||||||    
T  26209908 ttgtgtcaaatattttgtgtcatagttatcatt 26209940  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 14244728 - 14244634
Alignment:
Q  47 ggatttgacaaaactacccc-tgcttaatggtggaaatatccaaactatccatggtgtcgtatttgtgtcaaatattttgtgtctagttatcatt 140  Q
    ||||||||||||||| |||| ||||| ||||  ||||| |||||||| |||||||||| ||||||||||| |||||||||||| |||||||||||    
T  14244728 ggatttgacaaaactgccccatgctttatggatgaaatgtccaaactgtccatggtgttgtatttgtgtccaatattttgtgtttagttatcatt 14244634  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 5355334 - 5355234
Alignment:
Q  29 gaagaagatgggtctatgggatttgacaaaacta-cccctgcttaatggtggaaatatccaaactatccatggtgtcgtatttgtgtcaaatattttgtg 127  Q
    ||||||||||| |   |||||||| ||||||||| |||||| || |||||  ||||  | |||||||||||||||| |||||||||||||||||||||||    
T  5355334 gaagaagatggattgttgggattttacaaaactaccccctgttttatggttaaaatggctaaactatccatggtgttgtatttgtgtcaaatattttgtg 5355235  T
Q  128 t 128  Q
    |    
T  5355234 t 5355234  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 4747322 - 4747412
Alignment:
Q  54 acaaaactacccctgcttaatggtggaaatatccaaactatccatggtgtcgtatttgtgtcaaatattttgtgtctagttatcattgctc 144  Q
    |||||||| ||| ||||| ||||| ||||| || |||||  |||||| || |||||||| |||||||||||||||  | ||||||||||||    
T  4747322 acaaaactgcccttgctttatggttgaaatgtcaaaactgcccatggcgttgtatttgtttcaaatattttgtgttcacttatcattgctc 4747412  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 6013567 - 6013513
Alignment:
Q  86 ccaaactatccatggtgtcgtatttgtgtcaaatattttgtgtctagttatcatt 140  Q
    ||||| ||||| ||||||||||||||||||||   |||||||| |||||||||||    
T  6013567 ccaaattatccctggtgtcgtatttgtgtcaatatttttgtgtttagttatcatt 6013513  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 24763598 - 24763537
Alignment:
Q  79 gaaatatccaaactatccatggtgtcgtatttgtgtcaaatattttgtgtctagttatcatt 140  Q
    ||||| || ||| |||||||||||| ||||||||||| |||| ||||||| | |||||||||    
T  24763598 gaaatgtcaaaattatccatggtgttgtatttgtgtctaataatttgtgtttggttatcatt 24763537  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 42226095 - 42226050
Alignment:
Q  98 tggtgtcgtatttgtgtcaaatattttgtgtctagttatcattgct 143  Q
    |||||| ||||||||||| || ||| ||||||||||||||||||||    
T  42226095 tggtgttgtatttgtgtctaaaattgtgtgtctagttatcattgct 42226050  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 39075315 - 39075275
Alignment:
Q  98 tggtgtcgtatttgtgtcaaatattttgtgtctagttatca 138  Q
    |||||||||||||||||||||  |||||||| |||||||||    
T  39075315 tggtgtcgtatttgtgtcaaagtttttgtgtttagttatca 39075275  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 15889413 - 15889507
Alignment:
Q  50 tttgacaaaactacccctgcttaatggtggaaatatccaaactatccatggtgtcgtatttgtgtcaaatattttgtgtctagttatcattgctc 144  Q
    ||||||||||||  ||||| || |||   ||||| ||||||||||||||| ||| | |||||||||||||||||| |||  | ||||||||||||    
T  15889413 tttgacaaaactgtccctgttttatgagtgaaatgtccaaactatccatgatgttgaatttgtgtcaaatattttatgttcatttatcattgctc 15889507  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 43187770 - 43187864
Alignment:
Q  50 tttgacaaaactacccctgcttaatggtggaaatatccaaactatccatggtgtcgtatttgtgtcaaatattttgtgtctagttatcattgctc 144  Q
    ||||||||||||  ||||| || |||   ||||| ||||||||||||||| ||| | || |||||||||||||||||||  | ||||||||||||    
T  43187770 tttgacaaaactgtccctgttttatgagtgaaatgtccaaactatccatgatgttgaatctgtgtcaaatattttgtgttcatttatcattgctc 43187864  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 22484302 - 22484254
Alignment:
Q  92 tatccatggtgtcgtatttgtgtcaaatattttgtgtctagttatcatt 140  Q
    ||||||||||||||||||||||||||  | | ||||| |||||||||||    
T  22484302 tatccatggtgtcgtatttgtgtcaacaaatgtgtgtttagttatcatt 22484254  T

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Target: scaffold0186 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 18841 - 18895
Alignment:
Q  86 ccaaactatccatggtgtcgtatttgtgtcaaatattttgtgtctagttatcatt 140  Q
    ||||| ||||| ||||||||||||||||||||   |||||||| |||||||||||    
T  18841 ccaaattatccctggtgtcgtatttgtgtcaatatttttgtgtttagttatcatt 18895  T

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Target: scaffold0186; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 19577 - 19631
Alignment:
Q  86 ccaaactatccatggtgtcgtatttgtgtcaaatattttgtgtctagttatcatt 140  Q
    ||||| ||||| ||||||||||||||||||||   |||||||| |||||||||||    
T  19577 ccaaattatccctggtgtcgtatttgtgtcaatatttttgtgtttagttatcatt 19631  T

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