View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_low_43 (Length: 267)
Name: NF3576_low_43
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 36974683 - 36974440
Alignment:
| Q |
1 |
atactaagtgttatagtgattggaaaatataaaagctagttaagtcaaaactaatatgtagcccaagtggtgaaaacaaagtaattgtatagatccataa |
100 |
Q |
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| T |
36974683 |
atactaagtgttatagtgattggaaaatataaaagctagttaagtcaaaactaatatgtagcccaagtggtgaaaacaaagtaattgtatagatccataa |
36974584 |
T |
|
| Q |
101 |
gtggtctaagaaaaggtatagttgagataaagtcgaatcacaactagatagtggaaattatc-atggtattgtgagaaccggagtatctcacattgaatg |
199 |
Q |
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| T |
36974583 |
gtgatttaagaaaaggtatagttgagataaagtcgaatcacaattagatagtggaaattatcaatggtattgtgagaactggagtatctcacattgaatg |
36974484 |
T |
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| Q |
200 |
attcagtataactttttgtgtgtgaatcttcttctttcatctca |
243 |
Q |
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| T |
36974483 |
attcggtataactttttgtgtgtgaatcttcttctttcatctca |
36974440 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 16704990 - 16705077
Alignment:
| Q |
3 |
actaagtgttatagtgattggaaaatataaaagctagttaagtcaaaactaatatgtagcc-caagtggtgaaaacaaagtaattgta |
89 |
Q |
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| T |
16704990 |
actaagtgttatagtgattgtaaattataaaagttggttaagtgaaaactaatgtgcagccgaaagaggtgaaaagaaagaaattgta |
16705077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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