View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_low_48 (Length: 250)
Name: NF3576_low_48
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_low_48 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 3645784 - 3646021
Alignment:
| Q |
13 |
aatatagtattctgacactttataaaatatatttacacgataagatacaagggtaaaaagtgttaccgaaactgtttgctgtgcggtaacctctgcttct |
112 |
Q |
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| T |
3645784 |
aatatagtattctgacactttataaaatatatttacacgataagatacaagggtaaaaagtgttaccgaaactgtttgctgtgcggtaacctctgcttct |
3645883 |
T |
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| Q |
113 |
tgatccttggtggttcatgtaagatggcatcgtcgttaaagagcaatgcggaatcagaaggcaattgcaagtgcctcttcctccaagcggccacaaacac |
212 |
Q |
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| T |
3645884 |
tgatccttggtggttcatgtaagatggcatcgtcgttaaagagcaatgcggaatcagaaggcaattgcaagtgcctcttcctccaagcggccacaaacac |
3645983 |
T |
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| Q |
213 |
caccgcaatctgagtcaagggactacctaccggtttct |
250 |
Q |
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| T |
3645984 |
taccgcaatctgagtcaagggactacctaccggtttct |
3646021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 3658279 - 3658443
Alignment:
| Q |
75 |
ttaccgaaactgtttgctgtgcggtaacctctgcttcttgatccttggtggttcatgtaagatggcatcgtcgttaaagagcaatgcggaatcagaaggc |
174 |
Q |
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| T |
3658279 |
ttaccggaactgtttgctatgtggcatcctttgcttcttggtcttaggtgtttcacataggatatcatcctcttcatagagcaatgaagaatcagagggc |
3658378 |
T |
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| Q |
175 |
aattgcaagtgcctcttcctccaagcggccacaaacaccaccgcaatctgagtcaagggactacc |
239 |
Q |
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| T |
3658379 |
aattgcatgtgtctcttcctccaagcagccacaaacacgaccgcaatctgagtcaaaggactacc |
3658443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 180
Target Start/End: Original strand, 3641607 - 3641718
Alignment:
| Q |
63 |
gggtaaaaagtgttaccgaaactgtttgctgtgcggtaacctctgcttcttgatccttggtggttcatgtaagatggcatcgtcgttaaagagcaatgcg |
162 |
Q |
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| T |
3641607 |
gggtaaaaaatgttaccgaaactgcttgctgtgcagtaacttctgctttttgatccttagtggtttatcttaga------cgtcgttaaagagcaatgca |
3641700 |
T |
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| Q |
163 |
gaatcagaaggcaattgc |
180 |
Q |
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| T |
3641701 |
gaatcagagggcagttgc |
3641718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 41873098 - 41873045
Alignment:
| Q |
186 |
cctcttcctccaagcggccacaaacaccaccgcaatctgagtcaagggactacc |
239 |
Q |
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| T |
41873098 |
cctcttcctccaagcagccacataaaccactgcaatctgagtcaaaggactacc |
41873045 |
T |
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