View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_low_5 (Length: 544)
Name: NF3576_low_5
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 32993752 - 32994115
Alignment:
| Q |
1 |
acaatgtcacgtaattttcttggaatcgaaatcatcatgctattataactttagtgtacttcttttttagtacactttctagctttagtgtaaaagtaag |
100 |
Q |
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| T |
32993752 |
acaatgtcacgtaattttcttggaatccaaatcatcatgctattataactttagtgtacttcttttttagtacactttctaactttagtgtaaaagtaag |
32993851 |
T |
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| Q |
101 |
tttgtttgtgagttggacatattgacccgcgacatattgaaatttgtacatgtttcagtgtgatggatgacacaaaagaatacatatgcagagctatggt |
200 |
Q |
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| T |
32993852 |
tttgtttgttagttggacatattgacccgtgacatattgaaatttgtacatttttcagtgtgatggatgacacaaaagaatacatatgcagagctatggt |
32993951 |
T |
|
| Q |
201 |
cactgtagttgatcatcttgggaatgtttcctctaatcttgaaggccttatttctcataaaaattcattttctgatgctgagatacgaattcagtgcctc |
300 |
Q |
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| T |
32993952 |
tactgtagttgatcatcttgggaatgtttcctctaatcttgaaggtcttatttctcataaaaattcattttctgatgctgagatacgaattcagtgcctc |
32994051 |
T |
|
| Q |
301 |
acacaagttagtgctattacttgcataaattcacttatatgcataactatatgttatctcatta |
364 |
Q |
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| T |
32994052 |
acacaagttagtgctattacttgcataaattcacttatatgcacaattatatgttatatcatta |
32994115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 413 - 490
Target Start/End: Original strand, 32994370 - 32994447
Alignment:
| Q |
413 |
ttttggaattttgataatgtaggggactaggttgatacaaccctgcaatttcaagtacaaacttgagtatttcctctt |
490 |
Q |
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| T |
32994370 |
ttttagaatattaataatgaaggggattaggtcgatacaaccctacaatttcaagcacaaacttgattattacctctt |
32994447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 34620535 - 34620482
Alignment:
| Q |
424 |
tgataatgtaggggactaggttgatacaaccctgcaatttcaagtacaaacttg |
477 |
Q |
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| T |
34620535 |
tgatgatgtaggggactaggttgatataaccctacaatttcaaggactaacttg |
34620482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 34747972 - 34747919
Alignment:
| Q |
424 |
tgataatgtaggggactaggttgatacaaccctgcaatttcaagtacaaacttg |
477 |
Q |
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| T |
34747972 |
tgatgatgtaggggactaggttgatataaccctacaatttcaaggactaacttg |
34747919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 484
Target Start/End: Complemental strand, 34592399 - 34592339
Alignment:
| Q |
424 |
tgataatgtaggggactaggttgatacaaccctgcaatttcaagtacaaacttgagtattt |
484 |
Q |
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| T |
34592399 |
tgataatgtaggggactaggttgatatagccctacaatttcaaggagtaacttgggtattt |
34592339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 484
Target Start/End: Original strand, 5854652 - 5854723
Alignment:
| Q |
413 |
ttttggaattttgataatgtaggggactaggttgatacaaccctgcaatttcaagtacaaacttgagtattt |
484 |
Q |
| |
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| T |
5854652 |
ttttagaatattgataatgtaagggactaggttgttacaatcctacaacttcaaggaccaacttgagaattt |
5854723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 477
Target Start/End: Original strand, 5361297 - 5361351
Alignment:
| Q |
423 |
ttgataatgtaggggactaggttgatacaaccctgcaatttcaagtacaaacttg |
477 |
Q |
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| T |
5361297 |
ttgataatgtaggggactaaattgatacattcctacaatttcaattacaaacttg |
5361351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 474
Target Start/End: Original strand, 9078475 - 9078531
Alignment:
| Q |
418 |
gaattttgataatgtaggggactaggttgatacaaccctgcaatttcaagtacaaac |
474 |
Q |
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| T |
9078475 |
gaatattgataatgtggaggactaggttgatacaaccatagaatttcaagtataaac |
9078531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 466
Target Start/End: Complemental strand, 37578190 - 37578158
Alignment:
| Q |
434 |
ggggactaggttgatacaaccctgcaatttcaa |
466 |
Q |
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| T |
37578190 |
ggggactaggttgatacaaccctacaatttcaa |
37578158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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