View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3576_low_55 (Length: 243)
Name: NF3576_low_55
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_low_55 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 31009439 - 31009203
Alignment:
| Q |
1 |
atgtgaaacttttgtgacttgatttcaatagtcaagttgccatgttcacaatcaactccgaagtttggatgaccacaataattttgatggttgttagtac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31009439 |
atgtgaaacttttgtgacttgatttcaatagtcaagttgccatgttcacaatcaactccgaagtttggatgaccacaataattttgatggttgttaatac |
31009340 |
T |
|
| Q |
101 |
tccaaaatgggtaactaatgttggtgaaatctccacatctaaaaggtgcacaagatttgtagctttcaccatcactattgacatgtattgggattaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31009339 |
tccaaaatgggtaactaatgttggtgaaatctccacatctaaaaggtgcacaagatttgtagctttcaccgtcactattgacatgtattgggattaagaa |
31009240 |
T |
|
| Q |
201 |
gaagagtgagaggaagagaaagatgttgatgatgatg |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31009239 |
gaagagtgagaggaagagaaagatgttgatgatgatg |
31009203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 30983554 - 30983323
Alignment:
| Q |
1 |
atgtgaaacttttgtgacttgatttcaatagtcaagttgccatgttcacaatcaactccgaagtttggatgaccacaataattttgatggttgttagtac |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
30983554 |
atgtgaaacttttgtgacttaatttcaatagtcaagttgccatgttcacaatcaagtttgaagtttggatgaccacaataattttgttggttgttaatac |
30983455 |
T |
|
| Q |
101 |
tccaaaatgggtaactaatgttggtgaaatctccacatctaaaaggtgcacaagatttgtagctttcaccatcactattgacatgtattgggattaagaa |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| |||||||| |||||||| ||||||||||||| ||| || |
|
|
| T |
30983454 |
tccaaaatgggtaactaatattggtgaaatttccacaactaaaaggtgcacaagatttgaagctttcaacatcactagtgacatgtattggaatt---aa |
30983358 |
T |
|
| Q |
201 |
gaagagtgagaggaagagaaagatgttgatgatga |
235 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||| |
|
|
| T |
30983357 |
gaagagtgagagtaagagacagatgttgatgatga |
30983323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 30989718 - 30989487
Alignment:
| Q |
1 |
atgtgaaacttttgtgacttgatttcaatagtcaagttgccatgttcacaatcaactccgaagtttggatgaccacaataattttgatggttgttagtac |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
30989718 |
atgtgaaacttttgtgacttaatttcaatagtcaagttgccatgttcacaatcaagtttgaagtttggatgaccacaataattttgttggttgttaatac |
30989619 |
T |
|
| Q |
101 |
tccaaaatgggtaactaatgttggtgaaatctccacatctaaaaggtgcacaagatttgtagctttcaccatcactattgacatgtattgggattaagaa |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| |||||||| |||||||| ||||||||||||| ||| || |
|
|
| T |
30989618 |
tccaaaatgggtaactaatattggtgaaatttccacaactaaaaggtgcacaagatttgaagctttcaacatcactagtgacatgtattggaatt---aa |
30989522 |
T |
|
| Q |
201 |
gaagagtgagaggaagagaaagatgttgatgatga |
235 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||| |
|
|
| T |
30989521 |
gaagagtgagagtaagagacagatgttgatgatga |
30989487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 30977094 - 30976884
Alignment:
| Q |
22 |
atttcaatagtcaagttgccatgttcacaatcaactccgaagtttggatgaccacaataattttgatggttgttagtactccaaaatgggtaactaatgt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| | |
|
|
| T |
30977094 |
atttcaatagtcaagttgccatgttcacaatcaagtttgaagtttggatgaccacaataattttgttggttgttaatactccaaaatgggtaactaatat |
30976995 |
T |
|
| Q |
122 |
tggtgaaatctccacatctaaaaggtgcacaagatttgtagctttcaccatcactattgacatgtattgggattaagaagaagagtgagaggaagagaaa |
221 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||| |||||||| |||||||| ||||||||||||| ||| |||||||||||||| |||||| | |
|
|
| T |
30976994 |
tggtgaaatttccacaactaaaaggtgcacaagatttgaagctttcaacatcactagtgacatgtattggaatt---aagaagagtgagagtaagagaca |
30976898 |
T |
|
| Q |
222 |
gatgttgatgatga |
235 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30976897 |
gatgttgatgatga |
30976884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 30941658 - 30941427
Alignment:
| Q |
1 |
atgtgaaacttttgtgacttgatttcaatagtcaagttgccatgttcacaatcaactccgaagtttggatgaccacaataattttgatggttgttagtac |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||||||||| || | ||||||||| || |
|
|
| T |
30941658 |
atgtgaaacttttgtgacttgatctcaatagtcaagttgccatgttcacaatcaaggttgaagtttgggtggccacaataacttggttggttgttaacac |
30941559 |
T |
|
| Q |
101 |
tccaaaatgggtaactaatgttggtgaaatctccacatctaaaaggtgcacaagatttgtagctttcaccatcactattgacatgtattgggattaagaa |
200 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| |||||| ||||||||||||||||||||| |||||||| | |||||| ||| ||||||||||||| | |
|
|
| T |
30941558 |
tccaaaatggataactaacgttggtgaaatttccacaactaaaaggtgcacaagatttgaagctttcaacgtcactagtgatatgtattgggatt---at |
30941462 |
T |
|
| Q |
201 |
gaagagtgagaggaagagaaagatgttgatgatga |
235 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
30941461 |
gaagagtgcaaggaagagaaagatgttgatgatga |
30941427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University