View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_low_6 (Length: 522)
Name: NF3576_low_6
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 51 - 270
Target Start/End: Original strand, 41342185 - 41342404
Alignment:
| Q |
51 |
taagaatcaaatgctctaattaaaaatggttaaagtatattggcacaaatggaattactcacatttgtgtcaagagtgttgttgtagcattggtggttgc |
150 |
Q |
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| T |
41342185 |
taagaatcaaatgctctaattaaaaatggttaaagtatattggcacaaatggaattactcacatttgtgtcaagagtgttgttgtagcattggtggttgc |
41342284 |
T |
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| Q |
151 |
cgtcagaagatctaattggtcctgatggtgccattatgtccataccatgactcccagcataatataaattatttaacttcacaaaatcttttacctaaac |
250 |
Q |
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| T |
41342285 |
cgtcagaagatctaattggtcctgatggtgccattatgtccataccatgactcccagcataatataaattatttaacttcacaaaatcttttacctaaac |
41342384 |
T |
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| Q |
251 |
caaaaagttatataatgaga |
270 |
Q |
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|||||||||||||||||||| |
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| T |
41342385 |
caaaaagttatataatgaga |
41342404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 307 - 522
Target Start/End: Original strand, 41342449 - 41342664
Alignment:
| Q |
307 |
aaattaagtaagctttataactcaccttctctcggcttcttccactgattattgctgttggaaaataagtagcaacttcagatactgctgcacgcatctg |
406 |
Q |
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| T |
41342449 |
aaattaagtaagctttataactcaccttctctcggcttcttccactgattattgctgttggaaaataagtagcaacttcagatactgctgcacgcatctg |
41342548 |
T |
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| Q |
407 |
ccatttatttgtattaatatcaaattaaattaaacaccacatgatctttattgtaaacattattatttcagnnnnnnnttgacgcaattaatatgaaatt |
506 |
Q |
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| T |
41342549 |
ccatttatttgtattaatatcaaattaaattaaacaccacatgatctttattgtaaacattattatttcagaaaaaaattgacgcaattaatatgaaatt |
41342648 |
T |
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| Q |
507 |
aaaaaagaacaaacac |
522 |
Q |
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| T |
41342649 |
aaaaaagaacaaacac |
41342664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 440
Target Start/End: Complemental strand, 18219898 - 18219860
Alignment:
| Q |
402 |
atctgccatttatttgtattaatatcaaattaaattaaa |
440 |
Q |
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| T |
18219898 |
atctgccatttatttatgttaatatcaaattaaattaaa |
18219860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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