View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_low_62 (Length: 238)
Name: NF3576_low_62
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 52986621 - 52986736
Alignment:
| Q |
9 |
acatcatcatgaggtgaactgagtagattgacaaacattggtactgctctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtt |
108 |
Q |
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| T |
52986621 |
acatcatcatgaggtgaact----agcttgacaaacattggtactgctctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtt |
52986716 |
T |
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| Q |
109 |
tgaaagtgccgaagcagctt |
128 |
Q |
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| T |
52986717 |
tgaaagtgccgaagtagctt |
52986736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 54626946 - 54626843
Alignment:
| Q |
21 |
ggtgaactgagtagattgacaaacattggtactgctctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtttgaaagtgccga |
120 |
Q |
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| T |
54626946 |
ggtgaactaagaagcttgacaaacattggtactgcgc--catgatcaactaccaccttagtgttctcagaagttccagctgctatgtttgtgagtgccca |
54626849 |
T |
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| Q |
121 |
agcagc |
126 |
Q |
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|||||| |
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| T |
54626848 |
agcagc |
54626843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 54862405 - 54862508
Alignment:
| Q |
21 |
ggtgaactgagtagattgacaaacattggtactgctctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtttgaaagtgccga |
120 |
Q |
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| T |
54862405 |
ggtgaactaagtagcttgataaatattggtactgccc--catgatcaattaccaccttagtgttctccgaagttccagatgctatgtttgtgagtgccca |
54862502 |
T |
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| Q |
121 |
agcagc |
126 |
Q |
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|||||| |
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| T |
54862503 |
agcagc |
54862508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 51315786 - 51315717
Alignment:
| Q |
57 |
ctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtttgaaagtgccgaagcagc |
126 |
Q |
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| T |
51315786 |
ctccatgatcaattagcaacttagtgttctcagaagttccagctgctatgtttgtaagtgcgaaagcagc |
51315717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 128
Target Start/End: Complemental strand, 55635132 - 55635043
Alignment:
| Q |
37 |
tgacaaacattggtactgctctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtttgaaagtgccgaagcagctt |
128 |
Q |
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| T |
55635132 |
tgacaaacattggtattg-tc-ccgtgatcaattaccaccttaatgttctcagaagttccggatgctatgtttgtgagtgcccaagcagctt |
55635043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 50192334 - 50192387
Alignment:
| Q |
57 |
ctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtttg |
110 |
Q |
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| T |
50192334 |
ctccgtgatcaatcaccaccttagtgttctcagaagttccagatgctatgtttg |
50192387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 3672106 - 3672154
Alignment:
| Q |
59 |
ccatgatcaattaccaccttagtgttcttagaagttccagctactatgt |
107 |
Q |
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| T |
3672106 |
ccatgatcaattacaaccttagtgttctcagaagttccacctgctatgt |
3672154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 13401294 - 13401227
Alignment:
| Q |
59 |
ccatgatcaattaccaccttagtgttcttagaagttccagctactatgtttgaaagtgccgaagcagc |
126 |
Q |
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| T |
13401294 |
ccatgatcaattaccaccttagtattctcagaagttccggatgctatgtttgtaagagcccaagcagc |
13401227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 9889394 - 9889346
Alignment:
| Q |
59 |
ccatgatcaattaccaccttagtgttcttagaagttccagctactatgt |
107 |
Q |
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|||||||||||||| ||||||||||||| |||||||||| || |||||| |
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| T |
9889394 |
ccatgatcaattacaaccttagtgttctcagaagttccacctgctatgt |
9889346 |
T |
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