View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_low_64 (Length: 236)
Name: NF3576_low_64
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 50865254 - 50865056
Alignment:
| Q |
18 |
aattagctagggtcaattaacataataagcgattgaatttgaagaataaaggaagagaagagaaga-----tattattgactcactgattgtacaagtga |
112 |
Q |
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| T |
50865254 |
aattagctagg-tcaattaacataataagcgattgaatttgaagaataaaggaagagaagagaagagaagatattattgactcactgattgtacaagtga |
50865156 |
T |
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| Q |
113 |
taagaaaggcggaatgagaatgagtgagaagagaagacggagcattgtagtcaaaccgaggaagtctgattacgctcgaatgctgctcccatggcttcat |
212 |
Q |
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| T |
50865155 |
taagaaaggcggaatgagaatgagtgagaagagaagacggagcattgtagtcaaaccgaggaagtctgattacgctcgaatgctgctcccatggcttcat |
50865056 |
T |
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