View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_low_67 (Length: 229)
Name: NF3576_low_67
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_low_67 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 32 - 215
Target Start/End: Complemental strand, 580390 - 580207
Alignment:
| Q |
32 |
taggaacattaataaaggaaatggaatcagtaagcaactccaattcttctaacaacaaaaagttattgaaaagagaatgagaagcgagaacggagaatgg |
131 |
Q |
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| T |
580390 |
taggaacattaataaaggaaatggaatcagtaagcaactccaattcttctaacaacaaaaagttattgaaaagagaatgagaagcgagaacggagaatgg |
580291 |
T |
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| Q |
132 |
gatttgnnnnnnngaatggatttgaagaattttaactctccgcttaaagatgtttgataaccatgaatctagaaaagaccaatt |
215 |
Q |
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| T |
580290 |
gatttgaaaaaaagaatggatttgaagaattttaactctccgcttaaagatgtttgataaccatgaatctagaagagaccaatt |
580207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 1213916 - 1213863
Alignment:
| Q |
63 |
aagcaactccaattcttctaacaacaaaaagttattgaaaagagaatgagaagc |
116 |
Q |
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| T |
1213916 |
aagcaattccaattcttctaatagcaaaaagtttttgaaaagagaatcagaagc |
1213863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 8193030 - 8193171
Alignment:
| Q |
64 |
agcaactccaattcttctaacaacaaaaagttattgaaaagagaatgagaagcgagaacggagaatgggatttgnnnnnnngaatggatttgaagaattt |
163 |
Q |
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| T |
8193030 |
agcaattccaattcttctaataatatgaaatttttaaatagagaatcagaagcaagaacggagaatgagagttgaaactgcgaatggattcgaagatttt |
8193129 |
T |
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| Q |
164 |
taactctccgcttaaagatgtttgataaccatgaatctagaa |
205 |
Q |
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| T |
8193130 |
taactctgcggttgaagatgttagagaaccatatatctagaa |
8193171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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