View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_low_7 (Length: 504)
Name: NF3576_low_7
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 39780950 - 39781149
Alignment:
| Q |
1 |
cttcggctcaacagacaaccgaataactgaatacataaaatccacaaacgatatgcttaacaagcttaagaatttccnnnnnnnnnnnngtctgaactcc |
100 |
Q |
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| T |
39780950 |
cttcggctcaacagacaaccgaataactgaatacataaaatccacaaacgatatgcttaacaagcttaagaatttccttttttttttttctctgaactcc |
39781049 |
T |
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| Q |
101 |
ctaaacctctaatattataaatagctatagctaatagcaaaaaatttatgaatatgttattttatataacttttcaattcaaacccatcaaattaacact |
200 |
Q |
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| T |
39781050 |
ctaaacctctaatattataaatagctatagctaatagcaaaaattttatgaatatgttattttatataacttttcaattcaaacccatcaaattaacact |
39781149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 395 - 494
Target Start/End: Original strand, 39781337 - 39781436
Alignment:
| Q |
395 |
gttccactatattagtcaaccatgtcatcgcactgggttgctctcatgtgacccgatttgaaagactatatggtaattacaaaatctgcacacaggttct |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
39781337 |
gttccactatattagtcaaccatgtcatcgcactgggttgctctcatgtgacccgatttgaaagactatatggtaattacaaaatctgcaaacatgttct |
39781436 |
T |
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