View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3576_low_72 (Length: 207)

Name: NF3576_low_72
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3576_low_72
NF3576_low_72
[»] chr4 (8 HSPs)
chr4 (1-189)||(42769574-42769762)
chr4 (94-189)||(42743797-42743892)
chr4 (94-189)||(42753156-42753251)
chr4 (94-189)||(42762778-42762873)
chr4 (94-189)||(42717169-42717264)
chr4 (94-189)||(42734621-42734716)
chr4 (3-73)||(42762705-42762775)
chr4 (5-54)||(42734738-42734787)
[»] chr5 (1 HSPs)
chr5 (101-189)||(23040582-23040670)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 5e-98; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 42769574 - 42769762
Alignment:
Q  1 cgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtccgcttcatagcatccaccgcctacagcaagcggtggccaacat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  42769574 cgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtctgcttcatagcatccaccgcccacagcaagcggtggccaacat 42769673  T
Q  101 accttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatt 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769674 accttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatt 42769762  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 42743797 - 42743892
Alignment:
Q  94 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatt 189  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||    ||||||||||||||||||||||| ||||| |||||    
T  42743797 ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattggcaacgaaatt 42743892  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 42753156 - 42753251
Alignment:
Q  94 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatt 189  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||    ||||||||||||||||||||||| ||||| |||||    
T  42753156 ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattggcaacgaaatt 42753251  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 42762778 - 42762873
Alignment:
Q  94 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatt 189  Q
    |||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||    ||||||||||||||||||||||| ||||| |||||    
T  42762778 ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattagcaacgaaatt 42762873  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 42717169 - 42717264
Alignment:
Q  94 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatt 189  Q
    |||||| |||||||||||  |||||||||| || || ||||||||||||||||||||   ||||| |||||||||||||||||| |||||||||||    
T  42717169 ccaacaaaccttataggctacaactcgtgcttttggcgatccaccacttgctgttccattgccatagccaaatacacttgcattagcaacaaaatt 42717264  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 189
Target Start/End: Complemental strand, 42734716 - 42734621
Alignment:
Q  94 ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatt 189  Q
    |||||| ||||||||||| | ||||||||| || || ||||||||||||||||||||    |||| |||||||||||||||||| |||||||||||    
T  42734716 ccaacaaaccttataggcggaaactcgtgcttttggcgatccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatt 42734621  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 42762705 - 42762775
Alignment:
Q  3 ccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtccgcttcatagcatcca 73  Q
    |||||| |||||||||||| |||  |||||||||||| ||||||||||||||||| || ||||| ||||||    
T  42762705 ccgaaagcacatcaacaccatcacttatggcagcttcaaaaccagccaaaatgtctgcatcataacatcca 42762775  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 42734787 - 42734738
Alignment:
Q  5 gaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaat 54  Q
    |||| |||||||||||| |||  |||||||||||| ||||||||||||||    
T  42734787 gaaagcacatcaacaccatcacttatggcagcttcaaaaccagccaaaat 42734738  T

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Target: chr5 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 23040670 - 23040582
Alignment:
Q  101 accttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatt 189  Q
    ||||||||||| |||||||| || || |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||    
T  23040670 accttataggctgcaactcgagcttttggtgatccaccacttgctgttcctcggccattgccaaatacactcgcattagcaacgaaatt 23040582  T

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